Gene detail information of Glyur001242s00026116 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62740.1 | 3.00E-135 | SPFH/Band 7/PHB domain-containing membrane-associated protein family |
| NR | XP_003519076.1 | 0 | PREDICTED: hypersensitive-induced response protein 2 isoform X1 [Glycine max] |
| COG | YP_007201322.1 | 1.00E-90 | membrane protease subunit, stomatin/prohibitin [Singulisphaera acidiphila DSM 18658] |
| Swissprot | tr|Q9FM19|HIR1_ARATH | 6.00E-170 | Hypersensitive-induced response protein 1 |
| trEMBL | tr|I1JBQ0|I1JBQ0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G02540.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01242 | 44843 | 47610 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001242s00026116.1 | PF01145.20 | Band_7 | 9 | 166 | 2.90E-25 |
| Glyur001242s00026116.2 | PF01145.20 | Band_7 | 9 | 182 | 7.00E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.542 |
| SRR1783600 | control | 5.655 |
| SRR1783602 | moderate drought stress | 3.028 |
| SRR1811619 | moderate drought stress | 3.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.548 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.364 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.706 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.737 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 80.611 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 79.618 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.126 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.438 |
| SRR2868004 | Drought Stress (root) | 11.117 |
| SRR2967015 | Control (root) | 8.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.472 |
| SRR9715740 | Leaf | 3.642 |
| SRR9715741 | Leaf | 3.317 |
| SRR9715739 | Root | 7.900 |
| SRR9715742 | Root | 12.702 |
| SRR9715743 | Root | 12.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 120.244 |
| SRR8749028 | MeJA induced 9h | 106.917 |
| SRR8749029 | MeJA induced 9h | 170.254 |
| SRR8749030 | Uninduced | 152.768 |
| SRR8749031 | Uninduced | 163.435 |
| SRR8749032 | Uninduced | 161.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.461 |
| SRR8400027 | Control - Root | 8.169 |