Gene detail

Gene detail information of Glyur001241s00024530

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G25510.1	Protein phosphatase 2A regulatory B subunit family protein
NR	XP_007137075.1	hypothetical protein PHAVU_009G097600g [Phaseolus vulgaris]
Swissprot	tr\|Q93YV6\|2A5I_ARATH	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform
trEMBL	tr\|V7AU03\|V7AU03_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW09069.1}

Sequence

Transcript Sequence

>Glyur001241s00024530.1
CGAGAAAAGAAACAGAAATGGCGAATTTCAAATGATAATTATTCTCCACCCTTTTTTTGTAATTCATTTGCATTTTCTCTTTTCCTTTCCCTTTCCCTTTTCTCTGTAACCCACAACCATCAAGATTTTGATTTTNCACCAATGCATGCTGCAAAATCGCAAATTTCCCTCGACCCATTTAAAATTTCCACCTCAATCTCACGCAGCTTCTCTCACATTGTTTGGGATTTTGGTTCGCTTTCATGACCGAGATCTAGGGTTTCTCACCCCCTTTCCTCCCACATTGTCCCCTTCCACGGCTCTTGTAGAAGAAACCAACGTTTTCGAGTCACATTGATTCTCTTCCTTCATGGGTTCCCTCTAAAGCCTCGAAATTTATCGCTTCCAGCTACTGGGTCGCAATGCTCAAGCAATTCCTGAGCAAACTTCCCCGCAAGACATCGAAACCAGAGTCGGACGAGTCGGGCAGAGTCGACTCGTCTCGCTCGAGCGATGCCTCGCCGNGCGCCGCCGGAAAAAACCACAGGTCACACGGCGGCGGAGGCTCCTCCGCCGCGAAACGGACTTCCTCATCGGCGGTTTTTCCGGCGAGCACCGTGTCGGTGATCGAACCNTTGGTGCCGTTCAAGGATGTTCCAAGCTCGGAGAAGATGAACCTTTTCGTGAGCAAGTTGAGCCTTTGCTGCGTNACGTTCGATTTCACCGACCCTGGTAAGAACACGGTGGAAAAAGANGTAAAAAGGCGAACTTTGGTTGAACTCGTTGAATTCGTGTCTTCCTTTGGGTCCTCAAGGTTTAGTGAACCTGCTATCCTTGCAATGTGTAGAATGTGTGCTATTAATCTCTTTCGTGTTTTCCCGCCAAATTATCGAGCTAATTATCGTGGTNGTGGTGAGAATGATGATGATGAGCCAGCATTTGATCCTGCTTGGCCTCATTTGCAGCTTGTGTATGAATTGCTGCTTAAATTTATCACATCTTCGTGCCTTGATGCTAAGGTGGCAAAGAANTACATTGACCATTCGTTTATTTCAAGGTTGTTGGAGTTGTTTGATTCGGAGGATCCTAGGGAAAGGGACTGCTTGAAGACAATTCTCCATAGGGTTTATGGGAAGTTCATGGTGCATAGACCCTATATCAGGAAATCTGTTAACAATGTGTTTTATAGGTTTGTGTTTGAGACTGAGAAACACAATGGGGTTGCTGAGTTGTTGGAGATTCTCGGGAGCATAATCAGCGGGTTTGCTTTGCCCCTGAAAGAGGAGCACAAGATCTTCTTGTGGAGAGTTTTGATCCCTTTGCACAAACCGAAATCTATGGGGGTTTACTTCCAACAATTGTCCTACTGTGTTACGCAGTTCATAGAGAAGGAGCCCAAGTTAGCGAGCATTGTGATAAGAGGAATGTTGAAATATTGGCCAATAATACATAGTCAGAAAGAGGTAATGTTCCTGGGTGAGCTGGAAGAAATTTTGGAAGCAATTAGCATGATAGAGTTCCAAAGGATCATGGTCCCGTTGTTTTGGCGGATCGGATGCTGCATTAGCAGTTTACACTTTCAGGTATCTGAAAGAGCCCTTTTCTTATGGAACAACGACCACATTGTCAATTTGATTGCTCACAACCGCCAGGTGATCCTGCCCATCATATTTCCGGCTTTGGAAAGGAATTCTCAGAGCCACTGGAACCCAGCAGTGCTAAATTTAACTCATAATGTCAGAAAAATGTTCATGGAGATGGATGAGAAGCTGTTCCTGTCTTGCCATTCTCAGTTCAAGGAGGAAGATGCGATGCTAACCTCGGCAACCGAGAAGCGGAAGGAAGCCTGGACACAACTAGAGCATGCAGCCAGTCTCCAGCCTGTAGTTGGAAACACTGCTGTGTTAGTGTCTCCAATTTGATTACCTGAAGAAATGCATTTATGTATGTCTCACACACCCCTTCAAATCCTTTTATCTATTTCCTCCTGTTATGGTGGAAAAAAAAGCCACAAGAAACGTGGTAAATGGCTGTTACTGGGAGTATCTTTTCTTTTTAAGGGTCATAAATGCATGCTTTTAATCCTTTGGCAGCCAAATGTTGTAACATGTAACAATGTAACATACTTTTGATTACTGACTGTATGGTAGCAACTTGCCTCCTCCTGATAAAGCTGAGAAGGACCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01241	44735	47511	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

cellular_component
GO:0000159 protein phosphatase type 2A complex

molecular_function

GO:0005488 binding

GO:0008601 protein phosphatase type 2A regulator activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001241s00024530.1	PF01603.15	B56	72	483	2.60E-165

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.715
SRR1783600	control	30.954
SRR1783602	moderate drought stress	21.402
SRR1811619	moderate drought stress	21.529

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.534
DRR006520	Root Summer glycyrrhizin high producing strain	16.400
DRR006521	Root Winter glycyrrhizin high producing strain	2.957
DRR006522	Root Winter glycyrrhizin high producing strain	2.915
DRR006523	Root Summer glycyrrhizin low producing strain	10.039
DRR006524	Root Summer glycyrrhizin low producing strain	10.262
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.285
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.384

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.492
SRR2868004	Drought Stress (root)	9.803
SRR2967015	Control (root)	8.952

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.910
SRR9715740	Leaf	2.854
SRR9715741	Leaf	3.290
SRR9715739	Root	14.160
SRR9715742	Root	11.167
SRR9715743	Root	10.326

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.758
SRR8749028	MeJA induced 9h	8.113
SRR8749029	MeJA induced 9h	6.822
SRR8749030	Uninduced	3.043
SRR8749031	Uninduced	4.119
SRR8749032	Uninduced	3.393

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.715
SRR8400027	Control - Root	17.158