Gene detail

Gene detail information of Glyur001241s00024528

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25530.1	3.00E-113	DNAJ heat shock family protein
NR	XP_006581388.1	0	PREDICTED: dnaJ homolog subfamily B member 1-like [Glycine max]
COG	YP_001275988.1	5.00E-43	chaperone DnaJ domain-containing protein [Roseiflexus sp. RS-1]
Swissprot	tr\|Q9LZK5\|DNJ19_ARATH	8.00E-46	DnaJ protein ERDJ3B (Precursor)
trEMBL	tr\|I1K906\|I1K906_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G07710.1}

Sequence

Transcript Sequence

>Glyur001241s00024528.1
GCTAAATTTCAAAGAGTTCTTGGTCTGTTAACAAGATAACGAATTGCACTTCAAAATTAAAGCGTGGCGCTGTAGGTTCAAATCTTTTTCAATGCAAAGCCAACAAAAAGACAAATCTCTCTCAGTTAGACGTTACCATAATCAGATTAATCAATTTTCCAGATTTCTGAATTTCTGTCGTATAATTTGATTTGAGCAATTTTTGTTTGCCTTGTTGATATTGGCACTTAATCTTCAATGGACCCTACGAGGAGAAGGAAGTTATCAACTNTGCAACAAGAGTGGTTGATTTCATAATCTGGGTGTCCATGAAAAGACTCTAAATCTGAAGATTTGGTATTCAAGAAATTCCATACTGATTGTAACATTTGCAAGATTGATTCAGGTTTTTTCCTTTTTGAAGAAAAAAAAAAAATGGGGGTGGATTATTACAATATATTGAAGGTGGACAGAAATGCTACGGAAGATGATCTGAAGAAAGCATATAGAAAGTTGGCCATGAAATGGCACCCTGACAAGAACCCTAACAACAAAAAAGAAGCTGAAGCCAAATTCAAGCAGATCTCTGAAGCCTATGAGGTATTGAGTGATCCTCAAAAAAGGATGGTATATGATCAGGAGGGAGAGGAAGGGTTAAAAGATAGGCCACCACCTGGGAATGAACCATCANGTGGGTTTAATCCCAGAAATGCAGAGGATATCTTTGCTGAATTCTTTGGGAGTAGCCCTTTTGGATTTGGGTCATCTGGACCAGGGAGGTCCAAGAGATTCCAGTCTGATGGAGGTGACACCGCTTTCCAAACGTATAGTGGGAACATGCCGAAGAAGCCACCNCCTGTGGAGAGCAAATTGCCTTGCAGTTTGGAGGAGTTGTATTCTGGATCCACAAGGAAAATGAAGATCTCAAGGACTGTAATGGATGCCAACGGAAGGCCAATGCCAGAGACAGAGATATTAACCATTGATGTGAAGCCCGGTTGGAAGAAAGGGACAAAGATTACTTTCCCAGACAAAGGGAATCAGCAACCAAATCAACTGCCAGCAGACCTTGTGTTTGTGATTGATGAGAAGCCTCATGATTTCTTCAAGAGAGATGGCAATGACCTCATTGTGAACCAAAGGGTATCACTGGCAGAGGCCATTGGAGGAACTTCAGTGAGCCTCAGGACACTTGACAAACGGAACCTATGTGTCCCGGTGACCGACATCGTGAGCCCTGGTTACGAGCTGGTTGTTGCAAATGAAGGCATGCCAATAACAAAGGAGCCTGGTCATAAGGGTGATCTCAGGATCATATTTGAGGTTAAGTTCCCTACAAGATTGACCCCAGAGCAACGTGCAGGATTAAAGCGAGCATTGGGAAGTTGAGGATCACAATATCATATCATATTCTTTTCATGTCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01241	33725	36076	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

molecular_function
GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001241s00024528.1	PF00226.26	DnaJ	4	67	7.00E-29
Glyur001241s00024528.1	PF01556.13	CTDII	230	309	1.60E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.058
SRR1783600	control	3.091
SRR1783602	moderate drought stress	4.079
SRR1811619	moderate drought stress	4.151

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.401
DRR006520	Root Summer glycyrrhizin high producing strain	2.493
DRR006521	Root Winter glycyrrhizin high producing strain	4.460
DRR006522	Root Winter glycyrrhizin high producing strain	4.012
DRR006523	Root Summer glycyrrhizin low producing strain	5.813
DRR006524	Root Summer glycyrrhizin low producing strain	6.426
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.692
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.769

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.731
SRR2868004	Drought Stress (root)	4.720
SRR2967015	Control (root)	4.853

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.833
SRR9715740	Leaf	6.637
SRR9715741	Leaf	5.769
SRR9715739	Root	0.387
SRR9715742	Root	1.227
SRR9715743	Root	0.824

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.981
SRR8749028	MeJA induced 9h	3.020
SRR8749029	MeJA induced 9h	0.758
SRR8749030	Uninduced	2.181
SRR8749031	Uninduced	2.902
SRR8749032	Uninduced	0.898

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.248
SRR8400027	Control - Root	11.835