Gene detail

Gene detail information of Glyur001241s00024527

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11450.1	8.00E-90	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
NR	XP_004501276.1	1.04E-133	PREDICTED: psbP domain-containing protein 5, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|P82715\|PPD5_ARATH	3.00E-111	PsbP domain-containing protein 5, chloroplastic (Precursor)
trEMBL	tr\|G7JBQ7\|G7JBQ7_MEDTR	2.00E-132	PsbP domain protein {ECO:0000313\|EMBL:AES73723.1}

Sequence

Transcript Sequence

>Glyur001241s00024527.1
AAGAATCCAAATTGTACTATTGTGATTGCTGCGAGACGATGCTAGAAGATAATAAAACACAAAGGTTTGGAAAGTGAGGGAGATATCAAGGAAGAAGGCAGTGGTGTGGTGTGGTGTGGTGGTAGTGGATGACACAAGCGAAGTGAAATCAGCTAACAATGGTTTTGGTTTCACACTCACACTGTCCCTCACTCTCTTTCTCCTCCCCAAATTCTCCTTTGCTTCCTAAAAAGTATAACCTTATCTTCAGAAACAATAACAACAATACCAGGGTCGATATCCTTAACCAAAACAAGTGCCCATTATCGTTATCCGATGAAAGACCACATTTTTCATGCTGTTCTCTGAAACCCACTTCGCAAAGCAGAATTTCCAGAAGGGACTTGGTGCTTCTAGGCCTCACTTCCGTGTCTCTAACATGCCCATTTTCTCCGGCTCTTACTCTCTCTGCTTTGCAGTGACTCTTGCTGGAGAAGAGCCCAAAATGGCTTCATTTTCAGATGAAATAAATGCCTATTCTTATCTGTACCCCGTTGAATTGCCGTCTAAAAAATTTGTCTTCAAATGGGTAGAATCCCGAAAGCCTGAACGATATTCATCAGCTGCACCACTTTCTCCTAATGCACGCCTGCGAATTGTGTCCGAGCGTGTTGATATTATTGATAATGTCATCATTTCTGTCACGATAGGTCCTCCAAATTCAAGCCTTATACAATTGAAGGATAAGAGCAAATGGACTGCAAAAGATGTTGCTGATTCAGTTTTAGCTGATAAATCTTCACTGCGAGTTACCTCAAGTCAGCGCTCAGCTGAGAGTTCAGTTCTTGATACACATTCTGGCGAAATTGATGGTGAGCCTTACTGGTATTATGAATACCTTATTCGCAAATCGCCTATAACAATTTCCGAAGAATCGAGCGTCTATCGGCACTATGTTGCTTCAACAGCTGAAAGAGATGGTTATTTGTACTCCATCAGTGCTTCAACACTCAGCCCAAAGTGGAAAGAAATGGGGCATGTGCTTGAACAAACGGTGTCCTCGTTCCGTCTTGTCAGCCCAACCGAAAATTATGTTCCTCCNTACAAAGATCCCTGGAGATTTTGGTGAAAACTCATATTTTGTTTTCATTGTATTCATGTAATAACTTTTGTGGGGCAAAATTCATGTAAACATATAATGGCATCTCATATTCATTGAGTTATCTCAGTAATTTTGAGGTTCTTACACAAATGATTTTATATACTAGTGTCTCTTCAAGTAATAATAACCCTTTGAATTTGAAGGATGACCAGTGCCCAAGTCTATTTTATAGAACAGTGATGTCAAGATACATAGTCATAAATTATAATGGTTCAAATATCATGTCATCNACCAAATCTTAAACTACCTAAAAGCTTAAACTTTTAAATAAAGGCAAGGCATATGAAGAATTTAATACTTGCATTACATGTGATTTGTGAGGCTGAAAGACACACCTCTCTTTAACACAGCTAAGCTTCATCTGTCATCCTATCAAATCGTGCTATACTTCCTTTCATCTATATACAAAACTAAGGCTGAATTATCTATGAATTCAGCATTCTACCCTATTAACAAGCTCAATCTGAGCAAAAGAATAATATGCATCTGTACTACTTTTTACACACACAGACACACAAGTACCCCGGGAAGGCAAATGTGCAAGTCTTATATACCACAACAACCTAAGGTAAGAGCAACTAATCTTTTAGTATGTAGCATAATATTCAAAGAAAATGCATGGGGATGGAGCAGACTGTAGGCGCAGATGCAAGCCACTTGTAAGTTGATAGCTCAAGGTCCACTGAGTTGCCATCTCTGACTCCTTCATTTGCCTAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01241	28724	33145	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015979 photosynthesis

cellular_component

GO:0009523 photosystem II

GO:0009654 photosystem II oxygen evolving complex

GO:0019898 extrinsic component of membrane

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001241s00024527.1	PF01789.11	PsbP	114	239	4.20E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.383
SRR1783600	control	8.511
SRR1783602	moderate drought stress	10.581
SRR1811619	moderate drought stress	10.529

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.821
DRR006520	Root Summer glycyrrhizin high producing strain	7.906
DRR006521	Root Winter glycyrrhizin high producing strain	8.255
DRR006522	Root Winter glycyrrhizin high producing strain	8.250
DRR006523	Root Summer glycyrrhizin low producing strain	8.752
DRR006524	Root Summer glycyrrhizin low producing strain	8.702
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.775
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.051

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.123
SRR2868004	Drought Stress (root)	7.858
SRR2967015	Control (root)	7.475

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.631
SRR9715740	Leaf	23.855
SRR9715741	Leaf	14.160
SRR9715739	Root	0.890
SRR9715742	Root	2.510
SRR9715743	Root	2.147

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.593
SRR8749028	MeJA induced 9h	11.239
SRR8749029	MeJA induced 9h	8.804
SRR8749030	Uninduced	13.312
SRR8749031	Uninduced	7.426
SRR8749032	Uninduced	8.309

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.640
SRR8400027	Control - Root	12.997