Gene detail information of Glyur001241s00024526 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25660.1 | 0 | embryo defective 2410 |
| NR | XP_003527803.1 | 0 | PREDICTED: uncharacterized protein LOC100796955 [Glycine max] |
| COG | YP_007108756.1 | 3.00E-38 | hypothetical protein GEI7407_1208 [Geitlerinema sp. PCC 7407] |
| trEMBL | tr|K7KTM2|K7KTM2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G07740.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01241 | 15157 | 29523 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001241s00024526.1 | PF04357.8 | DUF490 | 1694 | 2083 | 3.60E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.115 |
| SRR1783600 | control | 1.195 |
| SRR1783602 | moderate drought stress | 2.142 |
| SRR1811619 | moderate drought stress | 2.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.395 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.333 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.423 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.398 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.448 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.456 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.877 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.487 |
| SRR2868004 | Drought Stress (root) | 4.399 |
| SRR2967015 | Control (root) | 3.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.690 |
| SRR9715740 | Leaf | 0.494 |
| SRR9715741 | Leaf | 0.912 |
| SRR9715739 | Root | 0.093 |
| SRR9715742 | Root | 1.569 |
| SRR9715743 | Root | 1.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.521 |
| SRR8749028 | MeJA induced 9h | 0.829 |
| SRR8749029 | MeJA induced 9h | 0.413 |
| SRR8749030 | Uninduced | 0.506 |
| SRR8749031 | Uninduced | 0.266 |
| SRR8749032 | Uninduced | 0.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.335 |
| SRR8400027 | Control - Root | 3.119 |