Gene detail information of Glyur001239s00031800 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G06000.2 | 5.00E-135 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004488085.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9ZUE9|PP149_ARATH | 5.00E-163 | Pentatricopeptide repeat-containing protein At2g06000 |
| trEMBL | tr|A0A072V891|A0A072V891_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH37588.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01239 | 77742 | 79421 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001239s00031800.1 | PF01535.15 | PPR | 121 | 146 | 0.52 |
| Glyur001239s00031800.1 | PF01535.15 | PPR | 190 | 217 | 1 |
| Glyur001239s00031800.1 | PF13041.1 | PPR_2 | 224 | 271 | 6.50E-14 |
| Glyur001239s00031800.1 | PF13041.1 | PPR_2 | 293 | 341 | 2.60E-17 |
| Glyur001239s00031800.1 | PF13041.1 | PPR_2 | 364 | 412 | 1.20E-13 |
| Glyur001239s00031800.1 | PF13041.1 | PPR_2 | 436 | 481 | 2.30E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.519 |
| SRR1783600 | control | 2.572 |
| SRR1783602 | moderate drought stress | 2.005 |
| SRR1811619 | moderate drought stress | 2.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.150 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.141 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.645 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.724 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.357 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.174 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.239 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.191 |
| SRR2868004 | Drought Stress (root) | 3.659 |
| SRR2967015 | Control (root) | 4.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.198 |
| SRR9715740 | Leaf | 1.969 |
| SRR9715741 | Leaf | 2.125 |
| SRR9715739 | Root | 2.181 |
| SRR9715742 | Root | 4.018 |
| SRR9715743 | Root | 3.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.557 |
| SRR8749028 | MeJA induced 9h | 1.600 |
| SRR8749029 | MeJA induced 9h | 0.436 |
| SRR8749030 | Uninduced | 0.203 |
| SRR8749031 | Uninduced | 0.091 |
| SRR8749032 | Uninduced | 0.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.950 |
| SRR8400027 | Control - Root | 4.229 |