Gene detail

Gene detail information of Glyur001239s00031796.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60820.3	5.00E-90	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
NR	XP_003532008.1	4.35E-134	PREDICTED: proteasome subunit beta type-1-like [Glycine max]
COG	NP_560846.1	8.00E-20	proteasome subunit beta [Pyrobaculum aerophilum str. IM2]
Swissprot	tr\|O82531\|PSB1_PETHY	4.00E-129	Proteasome subunit beta type-1
trEMBL	tr\|I1KXF0\|I1KXF0_SOYBN	2.00E-134	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01239	32344	41210	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02732	PSMB1	EC:3.4.25.1	Proteasome	map03050
			Proteasome	map03050

Gene Ontology

biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process

cellular_component
GO:0005839 proteasome core complex

molecular_function

GO:0004175 endopeptidase activity

GO:0004298 threonine-type endopeptidase activity

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001239s00031796.2	PF00227.21	Proteasome	13	161	3.10E-31

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	48.757
SRR1783600	control	49.259
SRR1783602	moderate drought stress	45.167
SRR1811619	moderate drought stress	45.855

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.187
DRR006520	Root Summer glycyrrhizin high producing strain	42.710
DRR006521	Root Winter glycyrrhizin high producing strain	63.467
DRR006522	Root Winter glycyrrhizin high producing strain	60.560
DRR006523	Root Summer glycyrrhizin low producing strain	32.767
DRR006524	Root Summer glycyrrhizin low producing strain	33.602
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.836
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.251

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	63.168
SRR2868004	Drought Stress (root)	62.825
SRR2967015	Control (root)	55.021

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.614
SRR9715740	Leaf	28.767
SRR9715741	Leaf	34.573
SRR9715739	Root	32.744
SRR9715742	Root	29.208
SRR9715743	Root	27.585

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	113.782
SRR8749028	MeJA induced 9h	63.051
SRR8749029	MeJA induced 9h	77.060
SRR8749030	Uninduced	37.212
SRR8749031	Uninduced	33.087
SRR8749032	Uninduced	39.536

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.869
SRR8400027	Control - Root	49.726