Gene detail

Gene detail information of Glyur001239s00031792

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17670.2	2.00E-65	tetratricopeptide repeat (TPR)-containing protein
NR	XP_004503241.1	6.09E-135	PREDICTED: uncharacterized protein LOC101513507 isoform X1 [Cicer arietinum]
COG	YP_724173.1	4.00E-12	hypothetical protein Tery_4743 [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q5XEP2\|HSOP2_ARATH	7.00E-11	Hsp70-Hsp90 organizing protein 2
trEMBL	tr\|G7IVX0\|G7IVX0_MEDTR	3.00E-123	Uncharacterized protein {ECO:0000313\|EMBL:AFK47705.1}

Sequence

Transcript Sequence

>Glyur001239s00031792.1
CTCGTCCTTTCATCGGCTGAAATTTCTTCTTTTCTCTCTACAGTACAACACCNCATTGGGGGGTTAGTCATGTCGTGGTGTTTCAGTTTTCAAATTGAATCAATCAATCAATCAATCCATGGACAAGAGTCACACTCTCTTCCTCCTCACTTGTAATCTGGCGACAGCCCCATCACCCAAACGACGTCGTCTTCCTCCCCCTCGCGCCAAAGAACAGCAGCTCCAAGAAATACGGGTGTGCACCAACCGCACCTGCCGCAGACAAGGATCCTTTCAAACCCTAGAAACCCTGTCTGGCCTCGCTCCTCCAAACGTCGCTGTAAAGTCGTGCGGCTGCTTGGGCCGGTGCGGCTCCGGCCCCAACCTGGTAGTCGTGCCGGACGGCGTCATCGTCGCTCATTGCGGGACGGCTGCTCGTGCGGCGGAGGTCATAGTGAGTCTCTTTGCCGGAGGAGAAGAAAATTCGGGTTATGATCCCAAGAGTAGTTTGGATGCGCTTGCTTTGAGGAAGAGNGCGGATATTGAGTTTCACAAGCGAAATTTCTCTGAGGCTGAGTTTCTGCTCTCACTGGCTATAGATTTAAAACCATTTGGTGGCTTGCATGTCATATTTAAATGCAGGTCATTTGTAAGGCTGGAATTGGGTAACTACTCTGGTGCCCTCGAAGATGCTAAGGAGGCTTTGGCATTAGCTCCCGGATATTCTGAGGCTTATATCTGCCAAGGTGATGCCTTTTTGGCATTGAACAAATTTGATTTGGCAGAACAGTCATATTTAGCATCTTTAGATATAGATCCTTCGGTCCGTCGCTCTAAATCATTCAAGGCTCGGATTACAAAGCTTCACGAAAAACTTGCTGCTGCTAATACANCATAAGATTTGGCTTGTGAATGAAAGTCCAGTTAATTCAATTACAGTGATGTCAGGAGGAATAATATTTCATCTACTTTTCCCAGTGAGGAGGCTTCGTGAAGAACTGCAAATTCTCCAGCAGCCTGGCTCATATGTTGGTGAAGGGGGTTGTTTGACTGGGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01239	1102	21097	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001239s00031792.1	PF13414.1	TPR_11	125	193	1.20E-07
Glyur001239s00031792.1	PF13181.1	TPR_8	197	227	0.00071
Glyur001239s00031792.2	PF13414.1	TPR_11	125	193	1.20E-07
Glyur001239s00031792.2	PF13181.1	TPR_8	197	227	0.00071

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.404
SRR1783600	control	4.096
SRR1783602	moderate drought stress	4.633
SRR1811619	moderate drought stress	4.113

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.310
DRR006520	Root Summer glycyrrhizin high producing strain	6.515
DRR006521	Root Winter glycyrrhizin high producing strain	4.390
DRR006522	Root Winter glycyrrhizin high producing strain	2.867
DRR006523	Root Summer glycyrrhizin low producing strain	1.630
DRR006524	Root Summer glycyrrhizin low producing strain	2.796
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.129
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.898

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.036
SRR2868004	Drought Stress (root)	6.161
SRR2967015	Control (root)	5.207

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.460
SRR9715740	Leaf	15.223
SRR9715741	Leaf	11.446
SRR9715739	Root	2.839
SRR9715742	Root	5.678
SRR9715743	Root	3.666

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.746
SRR8749028	MeJA induced 9h	2.354
SRR8749029	MeJA induced 9h	1.036
SRR8749030	Uninduced	1.303
SRR8749031	Uninduced	1.055
SRR8749032	Uninduced	2.086

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.869
SRR8400027	Control - Root	6.511