Gene detail

Gene detail information of Glyur001238s00031502

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56400.1	4.00E-21	WRKY DNA-binding protein 70
NR	XP_003544262.1	1.76E-60	PREDICTED: probable WRKY transcription factor 70-like [Glycine max]
Swissprot	tr\|Q9LY00\|WRK70_ARATH	5.00E-39	Probable WRKY transcription factor 70
trEMBL	tr\|K7M7W6\|K7M7W6_SOYBN	7.00E-61	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G36438.1}

Sequence

Transcript Sequence

>Glyur001238s00031502.1
ATCTCACATCATTTCGCATTCATTTGCTTGGTCCTTTCTTTCTATTCCAGCGAAGTGTGCTTTTCTTCTCTCTCCCACTTCCCACATATACCAGACGCACCTGTGCTGTGGCAGAACAATTACAAAAGAAGGGGGATAACTAACAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAACAAACACAAAAACAAAAGCACTTCTTCCATACATCCAAGAAAAGCCAAACAGATCCTGAGAGAGAAAAAAATGGATATCCATCATCATTGTCCTGAAAGTGTGAGCAAGAAGAGAGTGATAATCAAAGAGCTTGTTGAAGGGCAAGAAGCTGCTACCCAACTCAAGTTTCTGCTCGAGAATCCCTTTGGAGAAGCTGATGCTGCTGCTACTGATTCCTCTTCTCTTTCCTCAGAGGAACTCGTGGCNAGTGTGCTCAGATCTTTCACACAGGCCCTTTCTATTATCACCTCTTATCAGAATAATAATAATCTGCTGAATTCTTCCGGCGAANATGGGTTGCCGGTGACCGGAGATTCCACCAGTGACAAAAGGAAGANATCCTTTCCACCGGCCGCCAGAAAGGGTGCTACTGCTGGGAGAGGATGTTACAAGAGAAGAGTGCAGAGACATGGACCACAGTTTCCCACAACACCCCATGATAATCACGCATGGAGGAAGAGTTACTTTAGGTGCACACATAAGTATGATGAAGGTTGCTCCGCAAGAAAACAGGTGCAGCAGACAAAAGAGAATCCAGATATGTACCAAACTATGTACATTGGCATTCACACATGCAAAGCCACCCCTAAGGCTAAGGCAACAACAACACATGATCATGATTTGGTCACAAATTCTAGCAGCAGTACTTGTTGGGAATCATATCTTGAAACTGAGGTACTACCACCAAGTGAAGTACAGGATCACAATATTAGCTCATCAACAAGCCTAGCTATAAAACAAGAATATCCCAAAGAAGAACACACCCCAAATGATCACAAGCCCTTAAAGATGGAATCTGATATTGATGCAGCTGTGTATAATTCATCATCTACAGTTGGCTCTGATCAATGTCTGCTAATGGATTTTGGGGTGGAATCTGTTCATTTCTGCACTGACTTATTCCACTTTGATGAAAATCCTGAGAGAGAAAAAATGGATATCCATCATTGCCCTGAGAGTGGGAGCAAGAAGAGAGTGATAGTCAAAGAGCTTGTTGAGGGGCAAGAAGCTGCTACCCAACTCAAGTTTCTGCTCGAGAATCCCTTTGGAGGTGCTGATGCTGATTCCTCTTCTCTCTCCTTAGCGGAACTCGTCGCCAATGTGCTCAGATCTTTCACGGAAGCCCTTTCTATTATCACCTCTTATCAGAGTAATAATAATCTGCTGAATTCTTCCGGCGAAAATGGGTCGCCGGTGACCGGAGATTCCACCAGTGACAAAAGGAAGAGATCCATGCCACCGGCCAGAAAAGGTGGGAGAGGATGCTACAAAAGAAGGAAGAGTGCAGAGACATGGACCACAGTTTCCCACACCACCCATGATAATCATGCATGGAGGAAGTATGGACAGAAGGAAATCNTGAATTCTGAATTCCCCAGGAGTTACTTTAGGTGCACACATAAGTATGATGAAGGTTGCTCCGCAAGAAAACAGGTGCAGCAGACAAAAGAGAATCCAGATATGTACCAAACTATGTACATTGGCATTCACACAGATAGGAGAAGTTGAAGAAAAAAAAACTTAAATATATTTTTGTCGTTTATATTTGACTAAAATTTTGTTTAGTTTCTTAAATTTAAAAAATATTTTTTTAGTTCACAATTTGATAAAAATGTCATATTTAGTGATTAGCGCCCTAAGTATTATAAATGGATTAATCTAAATGGATAAAAGATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01238	38513	49785	-

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001238s00031502.1	PF03106.10	WRKY	142	183	5.90E-09
Glyur001238s00031502.1	PF03106.10	WRKY	430	488	1.30E-21
Glyur001238s00031502.2	PF03106.10	WRKY	137	195	3.00E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.311
SRR1783600	control	1.162
SRR1783602	moderate drought stress	1.498
SRR1811619	moderate drought stress	1.345

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.055
DRR006520	Root Summer glycyrrhizin high producing strain	1.885
DRR006521	Root Winter glycyrrhizin high producing strain	0.174
DRR006522	Root Winter glycyrrhizin high producing strain	0.455
DRR006523	Root Summer glycyrrhizin low producing strain	0.860
DRR006524	Root Summer glycyrrhizin low producing strain	0.974
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.595
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.536

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.249
SRR2868004	Drought Stress (root)	0.288
SRR2967015	Control (root)	0.334

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.043
SRR9715740	Leaf	11.133
SRR9715741	Leaf	11.445
SRR9715739	Root	0.079
SRR9715742	Root	1.875
SRR9715743	Root	1.207

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.111
SRR8400027	Control - Root	0.063