Gene detail

Gene detail information of Glyur001238s00031493.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40690.1	9.00E-178	NAD-dependent glycerol-3-phosphate dehydrogenase family protein
NR	XP_007141316.1	0	hypothetical protein PHAVU_008G185600g [Phaseolus vulgaris]
COG	YP_004626393.1	6.00E-77	NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein [Thermodesulfatator indicus DSM 15286]
Swissprot	tr\|Q949Q0\|GPDA2_ARATH	0	Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic (Precursor)
trEMBL	tr\|V7B6W0\|V7B6W0_PHAVU	0	Glycerol-3-phosphate dehydrogenase [NAD(+)] {ECO:0000256\|RuleBase:RU361243}

Sequence

Transcript Sequence

>Glyur001238s00031493.1
AAAAATACACAAATATCTCTCTCTCTCTCTCTCTCTCTCTCCGGGTAAAGGGGCGGCGAGCGAGTCAGCTTCTTCTCAAACAAAGTTTTAGGCAATGGCGGCAGTGTTGGAAGGGTCACTGGCAGTGACAACTCCATTCTTTTCTTTAAAGAAGACTCACAATAATCACAATGCTAATAATTCAAAGTTTCACGCTTTCCCTTCAAAACCCACCCTTCGTGGGACCCACCATCCTCCTCCTTCTTGTGCCGGAACAAATGCCTCTCCGCCTCAGGTACCCGACCCGGCGACGGAACCCGAGCCCGACCCGACCCGGGACCGCCGCAGAGCCGTCAGGGTGGCCTGGGAGAAGCTGGTCCGGTGGTCAAGGTCTTGGCGCTCCAAGTCCAACACTGATGTTCTCCAACGCACCAACAAGGTGGTGGTGCTTGGAGGGGGTTCATTTGGGACAGCAATGGCTGCTCACGTTGCAGATCAAAAGGATCAGTTAGAAGTCGTGATGCTTGTTCGGGATCCTCAAGTTTGCTTGTCTATCAATGAGAGGCACCGCAATTGTAATTACTTCCCGGATCACAGGCTGCCAGAAAATGTAATTGCAACAACTGATGCGGAATCTGCTTTGCGTGATGCGGATTACTGCTTTCATGCAGTGCCTGTTCAGAGTGTTGCTGATTATGTTGATCCAGGCTTGCCATTCATATCTCTCAGTAAAGGCCTAGAGCTGAACACACTGAGGATGATGGCTCAGATTATTCCTCAATCACTACGGAATCCTCGCCAGCCTTTCGTTGCACTATCAGGGCCTTCTTTTGCTCTGGAATTGATGAACAAGCTACCCACAGCAGCAATGGTGGTGGCATCAAAAGACAAAAAATTGGCAAATACAGTTCAGCAGCTACTAGCTTCGAGTCATTTAAGAATCAGCACATCAAGTGATGTTACAGGAGTTGAAATAGCAGGTGCACTCAAGAATGTGCTAGCAATAGCAGCTGGGATAGTAGAAGGTATGAATCTTGGTAACAACTCAATGGCTGCTCTTGTGTCACAAGGCTGTTCCGAGATACGGTGGCTTGCAACAAAGATGGGTGCAAAGCCGACTACAATAACTGGTCTGTCAGGAACTGGAGACATAATGCTTACATGTTTTGTGAATCTCTCGAGAAACAGGACGGTTGGTGTACGTCTTGGCTCAGGCAAGAAGCTTGAGAACATACTTAGTTCCATGAATCAGGTAGCAGAAGGTGTTTCAACGGCCGGAGCCGTGATCGCATTGGCACAGAAATATAATGTAAAGATGCCAGTGTTGACAGCGGTTGCGCGTATTATTGACAATGAACTTACCCCTAAGAAAGCTGTTTATGAGTTAATGAGCCTCCCTCAGGTTGAAGAAGTATGAAATCTTCCCAACACATCGTTTATCTACCAGCTACTTTTTAACTGCTGATGATTGAAAGGCATTCGCATAGTTGATTCTTTTTCACCGTTGTGCTTCTAATGCTTGAAGGCTTGGTGAGAACAATTTTGCACAATTGGGGTTTGAACCATTACAGTTAATAGAATTTGAGAAATGTGTAGATTCTTGACAATGCATACTCTCCCCTCAGTAATGCATGTCCTTTTTTTGTGCTCTCGCTTAGATGAATGTTATGGTTAAGTGCACATGTTCGAGATTACTGATATACTACAATATATTGATGTATTGAGAACTGCTCTAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01238	5696	10152	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00006	GPD1	EC:1.1.1.8	Glycerophospholipid metabolism	map00564
			MAPK signaling pathway - yeast	map04011

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006072 glycerol-3-phosphate metabolic process

GO:0046168 glycerol-3-phosphate catabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0009331 glycerol-3-phosphate dehydrogenase complex

molecular_function

GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity

GO:0016491 oxidoreductase activity

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001238s00031493.1	PF01210.18	NAD_Gly3P_dh_N	108	261	3.80E-34
Glyur001238s00031493.1	PF07479.9	NAD_Gly3P_dh_C	280	423	7.50E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.582
SRR1783600	control	2.529
SRR1783602	moderate drought stress	2.022
SRR1811619	moderate drought stress	1.982

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.150
DRR006520	Root Summer glycyrrhizin high producing strain	2.272
DRR006521	Root Winter glycyrrhizin high producing strain	2.751
DRR006522	Root Winter glycyrrhizin high producing strain	2.626
DRR006523	Root Summer glycyrrhizin low producing strain	1.836
DRR006524	Root Summer glycyrrhizin low producing strain	1.872
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.350
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.094

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.494
SRR2868004	Drought Stress (root)	2.687
SRR2967015	Control (root)	3.133

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.006
SRR9715740	Leaf	4.471
SRR9715741	Leaf	4.605
SRR9715739	Root	0.212
SRR9715742	Root	1.631
SRR9715743	Root	1.782

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.335
SRR8749028	MeJA induced 9h	2.011
SRR8749029	MeJA induced 9h	1.838
SRR8749030	Uninduced	1.877
SRR8749031	Uninduced	0.684
SRR8749032	Uninduced	0.688

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.810
SRR8400027	Control - Root	4.675