Gene detail

Gene detail information of Glyur001237s00036948.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25960.1	0	P-glycoprotein 2
NR	KHN04865.1	0	ABC transporter B family member 2 [Glycine soja]
COG	YP_005367043.1	3.00E-112	efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q8LPK2\|AB2B_ARATH	0	ABC transporter B family member 2 (Precursor)
trEMBL	tr\|I1J4T8\|I1J4T8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G02060.1}

Sequence

Transcript Sequence

>Glyur001237s00036948.1
AAAGTTACCTTCTAAATATAATTTTTTTTCTAAACTATGATGTATGATGTTTTGCTTTTCAGGTCACTTGGGCAGGCAGCACCAGACATTTCTGCGTTTATTCGAGCAAAGGCAGCAGCTTATCCCATTTTTGAGATGATAGAGAGAGAGACAATTAGCAAAAATAGCTCGAAAAGGGGCCAAATATTAAGTAAATTGGAGGGTAACATCCAATTTGTGAATGTCTATTTCAGTTACCCATCTCGTCCTGATGTTGTTATCTTCAANAATCTTTGTCTTGAGATTCCTTCAGGGAAGATTCTGGCCCTTGTGGGGGGAAGTGGTTCTGGGAAAAGCACAGTTATATCCTTGATGGAGCGCTTCTATGAACCACTTTCTGGTCAAATTCTATTGGATAGGAATGATATCAGGGAACTTGATCTCAAATGGCTTAGACAACAAATTGGGNTAGTAAATCAAGAGCCAGCACTTTTTTCTACTAGCATCAGGGAGAACATTCTGTATGGAAAACATGATGCCACTCTTGAAGAACTNAATCTNGCTGTTGAGCTTTCTGATGCTCGATCTTTCATCAACAATCTTCCTGATCGCTTAGATACTCAGGTTGGTGAGAGAGGGATACAATTATCAGGGGGACAAAAGCAAAGGATTGCAATATCTCGTGCTATAGTTAAGAACCCATCAATCCTTTTACTAGATGAAGCAACCAGTGCTCTTGACGCAGAGTCTGAAAAGAGTGTACAGGAGGCACTTGATCGTGTCATGGTTGGTAGAACAACTGTGATAGTGGCACACAGACTTTCTACCATTAGGAATGCAGATATGATCGTTGTTGTTCAGGGAGGGAGCGTTGTGGAAACTGGNAGCCATGAGGAGCTCATTTCAAGTCCCAATAGTGTATATGCATCTCTTGTTCAAATCCAAGAGGATCCTTGCTTGGGACNGTCATCAAGCATACAACATTCGAGAGAAATATCTCATCCAACAAGCATTGGTGGTAGTTTTCGCTCAGATAAAGAATCTATTGGTCGTTCTTTTACTGATGAAAGTGTTGGAAAGTCATCAAGGAATGCCTCANCAAGAAGACTATATTCTATGATTGGTCCTGACTGGTTTTATGGGGTTTTTGGAACCTTTGGNGCTTTTATTACTGGCTCCCTCATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTTGTATCATATTACATGGATTGGGATACAACACGCCATGAAGTGAAAAAAATTTCTTTCCTCTTTTGTGGGGCTGCAGTTGTAGCTGTCACTGCCTATGTCATTGAACATCTTTCTTTTGGAATCATGGGCGAGCGACTCACTCTTCGTGTCAGAGAATTAATGTTTTCTGCTATTTTGAAGAATGAAATTGGCTGGTTTGATGACACAAGCAACACAAGTTNTATGCTTTCATCACGTTTAGAGACTGATGCAACTTTATTAAAAACCATAGTGGTCGATCGTTCTACAATTCTCTTACAGAATGTTGGTCTGGTTGTTACTTCATTTGTTATATCCTTCATATTGAACTGGAGGATAACACTTGTTGTNTTGGCCACATATCCTTTGATCATTAGTGGTCACATCAGTGAGAAACTTTTCATGCAAGGCTTTGGTGGCAACCTAAGCAAAGCATATCTAAAAGNGAACATGTTAGCTGGGGAGGCTGTGAGTAATATACGNACTGTGGCTGCATTTTGTGCTGAACAAAAGGTCCTTGACCTTTATGCTAATGAGCTTGTTGATCCTTCCAAGTTTTCATTCAAACGAGGGCAAATTGCTGGCATTTTTTACGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTATGGTATGGATCTGTCTTGATGCAAAAGGAGCTGGCTAGCTTTAAATCAATCATGCAGTCATTTCTTGTTTTAATTGTAACAGCACTAGCTATGGGGGAAACTTTGGCACTGGCACCAGATCTTTTAAAAGGGAACCAAATGGNTGCATCAGTNTTTGAAGTGATGGATAGAAAGTCGGGAATAAGGCATGATGTTGGAGAAGAGTTTAAGATAGTGGAAGGAACAATTGTGCTGAAAAGAATCCATTTTAGTTACCCTTCAAGGCCAGACGTGGTTATTTTTGATGATTTCAGTCTAATAGTTCCTTCAGGAAAGAGTATTGCCTTGGTGGGGCACAGTGGTTCGGGTAAAAGCTCAGTAATCTCCCTTATACTCAGGTTTTATGATCCAACATCTGGGAAGGTGATGATNGATGGAAAAGACATCAAGGAAATTAAGTTGAAATCCCTTAGGAAACATATTGGTCTTGTGCAACAAGAACCTGCTCTTTTTGCAACATCCATTTATGAAAACATTCTTTATGGGAAGGAAGGAGCCTCTGAATCAGAAGTGATTGAAGCAGCTAAACTTGCCAATGCTCATAATTTTATCAGTGCTCTTCCTGAGGGCTACTCCACCAAAGCAGGTGAGAGAGGAGTTCAACTATCTGGTGGCCAGAAACAAAGGGTTGCAATAGCTAGGGCTGTTCTAAGAAACCCCAAAATCTTGCTACTAGACGAAGCCACTAGTGCACTAGATGTAGAGTCAGAGCGTGTGGTGCAGCAAGCTCTAGACAAGTTGATGCAAAACAGAACAACAGTCATAGTGGCACATAGGCTATCCACAATAAGAAATGCAGATCAAATATCTGTTTTACAGGATGGAAAGATCATTGAGCAAGGCACTCATTCAAGTCTTTTAGAGAACACAAATGGAGCTTATTTCAAATTAGTCAACCTACAACAAGAACAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01237	26427	31245	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05658	ABCB1, CD243	EC:3.6.3.44	ABC transporters	map02010
			Bile secretion	map04976
			MicroRNAs in cancer	map05206

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001237s00036948.1	PF00005.22	ABC_tran	78	225	6.50E-33
Glyur001237s00036948.1	PF00664.18	ABC_membrane	365	636	7.90E-45
Glyur001237s00036948.1	PF00005.22	ABC_tran	701	849	5.30E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.528
SRR1783600	control	4.536
SRR1783602	moderate drought stress	3.790
SRR1811619	moderate drought stress	3.910

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.202
DRR006520	Root Summer glycyrrhizin high producing strain	3.938
DRR006521	Root Winter glycyrrhizin high producing strain	1.761
DRR006522	Root Winter glycyrrhizin high producing strain	1.707
DRR006523	Root Summer glycyrrhizin low producing strain	6.184
DRR006524	Root Summer glycyrrhizin low producing strain	6.161
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.718
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.680

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.146
SRR2868004	Drought Stress (root)	2.869
SRR2967015	Control (root)	2.262

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.782
SRR9715740	Leaf	10.059
SRR9715741	Leaf	3.648
SRR9715739	Root	1.097
SRR9715742	Root	4.215
SRR9715743	Root	3.288

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.189
SRR8749028	MeJA induced 9h	0.090
SRR8749029	MeJA induced 9h	0.152
SRR8749030	Uninduced	0.266
SRR8749031	Uninduced	0.657
SRR8749032	Uninduced	0.295

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.632
SRR8400027	Control - Root	1.961