Gene detail information of Glyur001235s00033384 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08510.1 | 2.00E-153 | fatty acyl-ACP thioesterases B |
| NR | XP_004507621.1 | 0 | PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Cicer arietinum] |
| COG | YP_006720699.1 | 2.00E-24 | acyl-CoA thioesterase [Geobacter metallireducens GS-15] |
| Swissprot | tr|Q9SQI3|FATB_GOSHI | 0 | Palmitoyl-acyl carrier protein thioesterase, chloroplastic (Precursor) |
| trEMBL | tr|A9P5P1|A9P5P1_ARAHY | 0 | Acyl ACP-thioesterase {ECO:0000313|EMBL:ABO38554.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01235 | 60741 | 65097 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10781 | FATB | EC:3.1.2.14 3.1.2.21 | Fatty acid metabolism | map01212 |
| Fatty acid biosynthesis | map00061 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001235s00033384.1 | PF12590.3 | Acyl-thio_N | 1 | 123 | 8.30E-51 |
| Glyur001235s00033384.1 | PF01643.12 | Acyl-ACP_TE | 134 | 399 | 3.80E-114 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.263 |
| SRR1783600 | control | 8.252 |
| SRR1783602 | moderate drought stress | 6.573 |
| SRR1811619 | moderate drought stress | 6.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.167 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.948 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.459 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.406 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.602 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.831 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.800 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.209 |
| SRR2868004 | Drought Stress (root) | 17.909 |
| SRR2967015 | Control (root) | 15.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.795 |
| SRR9715740 | Leaf | 12.022 |
| SRR9715741 | Leaf | 13.647 |
| SRR9715739 | Root | 9.885 |
| SRR9715742 | Root | 11.275 |
| SRR9715743 | Root | 11.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.499 |
| SRR8749028 | MeJA induced 9h | 19.350 |
| SRR8749029 | MeJA induced 9h | 9.635 |
| SRR8749030 | Uninduced | 16.094 |
| SRR8749031 | Uninduced | 6.398 |
| SRR8749032 | Uninduced | 4.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.442 |
| SRR8400027 | Control - Root | 21.800 |