Gene detail

Gene detail information of Glyur001235s00033382.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03390.1	1.00E-175	HXXXD-type acyl-transferase family protein
NR	XP_003524012.1	0	PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Glycine max]
Swissprot	tr\|Q94CD1\|HHT1_ARATH	8.00E-71	Omega-hydroxypalmitate O-feruloyl transferase
trEMBL	tr\|I1JWA0\|I1JWA0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G22130.1}

Sequence

Transcript Sequence

>Glyur001235s00033382.1
ATGGATGCTGCTGCACATGCTGAGGAGTGCAAAGCTTGCTGCAGCCAACAAAAAAAGAGAAGAGACAAGTCATACAAAGACGCCATTGTGCATGACCTCCCTCAGCACTTCCTCATGGCTCCTCCATGGGTTCAAGAGCTCCATCTCCGTCACTTTAGCATTCCCGTAACCATTGATAACATGATTTCCGTTANGCCGTCAAGGCCTATTCCCGTCAAACCAGGTGATAGTTTATACCTTTCCAACCTCGATGACATGATTGGAGCACGTGTATTCACACCCACGGTGTACTTTTATGAACCNAACAACATCGAAAAACCTGTGACAAAAACACTACTCGGTGCTCTTGCTGATGTTTTAGTGCCTTATTACCCTCTCTCAGGGAGGCTAAGAGAGACCAAGAATGGCAAATTGGAAGTGTTTTTTGGACCAGAACAAGGAGCACTTTTGGTAGAGGCAAGAACTACTATTGCCTTAGCTGAACTAGGAGACCTTGCAGCTCCAAACCCATCTTGGGAACCATTGATCTTCAAGTTTCCCAATGAAGAGCAATACAAAGTCCTTGAAATGCCACTGGTCATTGCTCAGGTTACCCTATTCCGTTGTGGTGGATTTAGCCTTGGCTTGAGGCTTTGCCATTGTATTTGTGATGGCATGGGGGCTATGCAGTTCCTAGGTGCATGGGCTGCCACGGCNAAATCAGGGACACTCGTTATAGACCCTGAGCCCTGTTGGGACAGGGAGATGTTTAGGCCTCGTGATCCACCTGTGGTGAAGTTTCCCCACATGGAGTTCATGAGGATTGACGAGGGCTCCAACCTGACAATGACACTGTGGCAAACCAAGCCGGTTCAGAAGTGTTACAGGATCAAGCGCGAGTTCCAGAACCGCTTGAAAGCTCTTGCTCAGCCATTTGATGCCGCGGGTTGCACCACTTTTGATGCCATGGCGGCTCATATTTGGAGATCATGGGTGAAGGCTCTTGATGTGAGGCCTCTAGATTACCAGCTCAGGTTGACATTTTCGGTCAACGCCCGGCAGAAGCTCAGGAGCCCACCGCTGAAAGAAGGGTTTTATGGCAATGTAGTCTGTGTCGCGTGCACGACAAGCACCGTGTCNGAGCTTGTGCACGGACAGCTCCCTGAAACTACCCGTCTGGTTCGTGAAGCTAGACAGGTTGTCTCGGAGGAGTATCTGAGATCCACTGTGGATTATGTTGAGGTGGATAGACCAAGGCAGCTTGAGTTTGGGGGTAAACTAACAATAACCCAATGGACCAGGTTCTCAATATACAAGTGTGCAGATTTTGGGTGGGGTAGGCCAATCTATGCTGGTCCTATAGATTTAACACCCACGCCTCAAGTTTGTGTGTTTCTACCCGAAGGAGAGGCTGATTGTAGTGGTTCTATGATTGTGTGCATATGCTTGCCTGAGTCTGCTGCCCAGAAGTTTACCCAAGCCTTGTTGCTCGATTCGGTATTGACACAAACCTTGTGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01235	24635	27640	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15400	HHT1	EC:2.3.1.188	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001235s00033382.1	PF02458.10	Transferase	56	486	3.70E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.043
SRR1783600	control	0.029
SRR1783602	moderate drought stress	0.099
SRR1811619	moderate drought stress	0.057

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.158
DRR006522	Root Winter glycyrrhizin high producing strain	0.056
DRR006523	Root Summer glycyrrhizin low producing strain	0.272
DRR006524	Root Summer glycyrrhizin low producing strain	0.273
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.147
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.181

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.170
SRR2868004	Drought Stress (root)	0.128
SRR2967015	Control (root)	0.126

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.024
SRR9715740	Leaf	0.086
SRR9715741	Leaf	0.000
SRR9715739	Root	0.019
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.026
SRR8749028	MeJA induced 9h	0.186
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.392
SRR8749031	Uninduced	0.290
SRR8749032	Uninduced	0.076

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.149
SRR8400027	Control - Root	0.164