Gene detail

Gene detail information of Glyur001235s00033380.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24330.1	2.00E-177	O-Glycosyl hydrolases family 17 protein
NR	XP_004513603.1	0	PREDICTED: glucan endo-1,3-beta-glucosidase 5-like [Cicer arietinum]
Swissprot	tr\|Q6NKW9\|E138_ARATH	4.00E-179	Glucan endo-1,3-beta-glucosidase 8 (Precursor)
trEMBL	tr\|I1JWA3\|I1JWA3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G22190.1}

Sequence

Transcript Sequence

>Glyur001235s00033380.1
ATGGCACAAGTGATCAATGCTTCAAATTGTGGGTGTTACCCAGTGGCATTCCTCTTTATTGTCTTGTTAACTTTGGTACCGAGTGGCTCTGCTTGGGTTGGTGTGAACTGGGGAACCATGGCAACCCACCAGCTTCCACCAGAGAAAGTGGTTAAGATGCTTAAGGAAAATGGGTTCCGCAAATTGAAGCTGTTTGATGCGGATGAGTCCATTATGGCATCTCTGATGGGGACTGATATTGAGGTCATGNTGGCAATACCCAATGTCATGTTGGATAAGATTAGTAACAGTCCCAAAGCAGCAGATTCTTGGCTTTATGAAAATGTCACCAGTTACTTGTACACTGGTGGTGTCAATATCAAGTATGTTGCAGTGGGTAATGAGCCTTTCCTCAAAGCATATAACGGTACCTATCTAAACAAAACTCTGCCAGCTCTTAAGAACATACAAACTTCACTCAACAAGGCAGGGCTTGGTTCAAAGGTCAAAGTCACTGTTCCATTCAATGCTGACATTTACTACTCACCAGACTCAAATCCAGTGCCATCAGCTGGTGACTTCAGGCCTGAAGTAAGAGACCTCGTTATTGAGATAATCCAATTCCTATATTCATATGATGCACCTTTTGCTGTCAATATCTACCCTTTCCTTAGTCTTTATGGCAATGATGATTTCCCCTTTGATTTTGCATTCTTTGATGGAAAAAACAAGCCTCTTAGAGATGGTAAAACACTTTATACCAATGTCTTTGATGCAAATCTAGATACCCTCATGTGGGCTTTAGACAAAGCTGGATATCCTGACATTAAGGTTATGGTTGGAGAAGTTGGTTGGCCAACTGATGGTGATAAGAATGCTAATGCCAAGAATGCAAAGAGGTTCAACCAGGGTTTGATTAAACATGCTCTGAGTGGNAATGGTACCCCAAAAAGGAAAGGCATAATTGACTTGTTTCTGTTCAGCCTCATTGATGAGAATGCTAAAAGTGTTGCTCCTGGGAACTTTGAGAGGCATTGGGGTTTTTTTGAGTTTGATGGAAAGCCAAAGTATGAGTTGGACTTAACAGGTAAACATAAGGAAAAGGGTCTTGTACCTGTGGAAGGGATAAAGTACATGGAGAAGAGGTGGTGTGTTTTGGACCCAGATGTTACTAACTTGGATGATTTGGCTGATAGTATTGACTATGCTTGTAGCCTTTCTGATTGTACTGCTCTTGGCTATGGCTCTACTTGTAATGGTTTGAGTGTCCAAGGGAATGCATCTTATGCCTTCAATATGTATTATCAAGTGAATGACCAGAGGGACTGGGACTGTGATTTCAATGGTTTGGCTATTGTTACACATGAGGATCCTTCACAAAAGGAGTGCCAATTCCCTGTGATGATTGCTTGTGGTTCTTCTTTGCTGCTACTGANTGGAGGGCTTTCAGGTGTCCTGATTAGAGCTATGAAGGTATATATTCTTGTTATGTTTTTGCTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01235	17277	19625	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001235s00033380.1	PF00332.13	Glyco_hydro_17	33	353	2.50E-75
Glyur001235s00033380.1	PF07983.8	X8	376	444	2.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.369
SRR1783600	control	0.345
SRR1783602	moderate drought stress	0.181
SRR1811619	moderate drought stress	0.206

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.702
DRR006520	Root Summer glycyrrhizin high producing strain	0.821
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.722
DRR006524	Root Summer glycyrrhizin low producing strain	0.689
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.062
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.063

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.068
SRR2868004	Drought Stress (root)	0.786
SRR2967015	Control (root)	0.757

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.846
SRR9715740	Leaf	0.128
SRR9715741	Leaf	0.351
SRR9715739	Root	0.523
SRR9715742	Root	0.725
SRR9715743	Root	0.783

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.096
SRR8749028	MeJA induced 9h	0.117
SRR8749029	MeJA induced 9h	0.020
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.312
SRR8400027	Control - Root	0.203