Gene detail

Gene detail information of Glyur001234s00026349.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12840.3	6.00E-28	nuclear factor Y, subunit A1
NR	XP_004510989.1	1.58E-162	PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q9LXV5\|NFYA1_ARATH	3.00E-38	Nuclear transcription factor Y subunit A-1
trEMBL	tr\|A0A072TPE2\|A0A072TPE2_MEDTR	5.00E-158	CCAAT-binding transcription factor {ECO:0000313\|EMBL:KEH19086.1}

Sequence

Transcript Sequence

>Glyur001234s00026349.1
ACAGAGAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGTGGGTCTCACCTCAATGCAATTCAGGTTCTGAAAACCAAAGCTTCCCCACAGGAAAAACCTGTGCAAGGATGCCAGGGAAACCTGAAACTGGTGATTGGCGAGTACAGCATAGCGAGCAGCTTCAGTTTCAATCTTCCATTCACTCTCATCATCATCAACCTTGGTGGCATGGAGTTGGGGGAATTGAAACTGCCTCCAAATCATCTTCAGCTGATCAGCTAAATGGTTCAATCATGAATAATGGTGTCACACATTCAGAGGCTAATAATGAAGATCTGGCTGATGGAGTTGATTTCAATAAACAAAGGCAGCCTATGGTTTCTCCTTCACTGTCTGTAACTGAGAAGTCAGGTGGGGATGTTGCCAAAGAGCACCAAAACATATTCAAACATGCCCTGTCCTCAACCCCATTTACCANGGGCAAACACCTTGATCCAAATTCCCAGATGGAACTTGTTGGTCATTCAGTTGTTTTAACATCTCCTCATTCAAATGCACAGTATGGTCAAATCTTGACTACTTATGGGCAACAAGCTATGATAAACCCTCAGCTATACAAAATGCATCATGCTAGAATGCTTTTGCCACTTGAAATGGAAGAGGAGCCTGTATATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCGCGTGCTAAGGCTGAGCTTGAAAAGAAAGTGATTAAAGTTAGAAAGCCATATCTTCACGAATCCCGTCACCTACATGCTATGAGAAGGGCAAGGGGAAACGGGGGTCGCTTTCTCAACACAAAGAAGCTCGAACATAACAATCCTAATGCCACTCTAGAAAAAGGCGACAGCNCCGGTGCAAACTCCTCAACAAGCCCACCAGCTGCCACTCAATATTTGCTTACNAGCAATGGGAATCAAGGCTCGTCAAATATTGCATCACAGTGCAAGGTTCAANACATGCACAAAGTGCAGAGTTTATGCATTGGCTACCATGATGGAAATGGCTTTACAGCACTATGCCATTCACAAGCAAATGGGAAACAGGAGGGTGACTTCTTTGGTAAAGAGAGGGACCCAAATGGTGCTATTAANTAGCCCTTCCCTCAGCCATACAGCAACAGCAACAGTGAAGATGAAGAAGGGNTTTGTCTCATCCAACTTATGATGCTGTAGTTCGAAGGCAATTCATTCTTGGCTCAGTTAGTTAGATTAAAGTGGTGTGAGACCAGTAACTAACATAGTACACTCCCCAGCCTAGTTTGGTCTCCCCCTTGCTTTGTGTTTCTCTTTACAAGTCCATTTGTAAAATGGGTGAGAAATAAAAGATGATAACACTTTGGTTTGTGAGAACTTCACAAGTTGATATTCTAAACTGTGTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01234	55235	59680	-

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0016602 CCAAT-binding factor complex

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001234s00026349.1	PF02045.10	CBFB_NFYA	213	269	9.20E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	58.252
SRR1783600	control	58.387
SRR1783602	moderate drought stress	28.681
SRR1811619	moderate drought stress	28.290

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.249
DRR006520	Root Summer glycyrrhizin high producing strain	15.549
DRR006521	Root Winter glycyrrhizin high producing strain	20.155
DRR006522	Root Winter glycyrrhizin high producing strain	19.544
DRR006523	Root Summer glycyrrhizin low producing strain	6.447
DRR006524	Root Summer glycyrrhizin low producing strain	6.488
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.146
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.252

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.685
SRR2868004	Drought Stress (root)	42.693
SRR2967015	Control (root)	68.714

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.741
SRR9715740	Leaf	5.792
SRR9715741	Leaf	5.057
SRR9715739	Root	42.018
SRR9715742	Root	53.910
SRR9715743	Root	51.316

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.841
SRR8749028	MeJA induced 9h	3.355
SRR8749029	MeJA induced 9h	2.334
SRR8749030	Uninduced	1.795
SRR8749031	Uninduced	0.503
SRR8749032	Uninduced	0.826

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	69.840
SRR8400027	Control - Root	61.832