Gene detail information of Glyur001234s00026347 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63520.1 | 1.00E-116 | carotenoid cleavage dioxygenase 1 |
| NR | AFK46945.1 | 2.24E-168 | unknown [Medicago truncatula] |
| COG | YP_007141927.1 | 3.00E-49 | 9-cis-epoxycarotenoid dioxygenase [Crinalium epipsammum PCC 9333] |
| Swissprot | tr|Q8LP17|CCD1_PEA | 6.00E-166 | Carotenoid 9,10(9',10')-cleavage dioxygenase 1 |
| trEMBL | tr|I3T353|I3T353_MEDTR | 8.00E-169 | Uncharacterized protein {ECO:0000313|EMBL:AFK46945.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01234 | 47655 | 53809 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001234s00026347.1 | PF03055.10 | RPE65 | 59 | 180 | 6.90E-15 |
| Glyur001234s00026347.1 | PF03055.10 | RPE65 | 172 | 412 | 1.40E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.970 |
| SRR1783600 | control | 16.916 |
| SRR1783602 | moderate drought stress | 25.975 |
| SRR1811619 | moderate drought stress | 26.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.313 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.096 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.937 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.491 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.129 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.655 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 160.042 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 159.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.371 |
| SRR2868004 | Drought Stress (root) | 42.422 |
| SRR2967015 | Control (root) | 34.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 205.479 |
| SRR9715740 | Leaf | 292.086 |
| SRR9715741 | Leaf | 201.308 |
| SRR9715739 | Root | 5.245 |
| SRR9715742 | Root | 20.402 |
| SRR9715743 | Root | 17.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.812 |
| SRR8749028 | MeJA induced 9h | 13.723 |
| SRR8749029 | MeJA induced 9h | 9.559 |
| SRR8749030 | Uninduced | 7.593 |
| SRR8749031 | Uninduced | 1.812 |
| SRR8749032 | Uninduced | 5.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.891 |
| SRR8400027 | Control - Root | 28.062 |