Gene detail

Gene detail information of Glyur001234s00026346

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62410.1	0	structural maintenance of chromosomes 2
NR	XP_004510992.1	0	PREDICTED: structural maintenance of chromosomes protein 2-1-like [Cicer arietinum]
COG	YP_183430.1	6.00E-85	chromosome segregation ATPase [Thermococcus kodakarensis KOD1]
Swissprot	tr\|Q9C5Y4\|SMC21_ARATH	0	Structural maintenance of chromosomes protein 2-1
trEMBL	tr\|I1M0W9\|I1M0W9_SOYBN	0	Structural maintenance of chromosomes protein {ECO:0000256\|PIRNR:PIRNR005719}

Sequence

Transcript Sequence

>Glyur001234s00026346.1
CTCTCTGCAACATTCATTCGACCGCTCGGAAAATCACACCGACCAAACGCTGCCGTTTAGGGTTTCGATCTCCAAAACCCTATACCGCTTCTTCCCAAATCCATTTCCCCCCGAACTCNCCAATTTCCCCCGTTGCGATTCAGAAGATGTACATCAAGGAGATTTGCCTGGAAGGTTTCAAATCGTACGCNACACGAACCGTCGTTCCGGGCTTCGACCCCTTCTTCAACGCCATCACCGGCTTGAANGGTTCCGGCAAATCGAACATTCTCGATTCGATTTGCTTCGTGCTCGGCATCACCAACTTGCAGCAGGTTCGGGCTTCCAACCTTCAGGAGCTCGTGTACAAGCAGGGCCAAGCAGGAATTACCAAGGCCACTGTCTCCATCGTGTTCGATAATTCCGATAGGAGTCGAAGCCCTCTTGGTTATGAAGACCATTCTGAGATTACAGTAACAAGACAGATTGTGGTTGGAGGGAGGAACAAATATTTGATCAACGGGAAACTTGCACAGCCCAGTCAAGTCCAAAACCTTTTCCATTCGGTGCAGCTTAATGTTAATAATCCGCATTTCCTCATAATGCAAGGGCGCATCACTAAGGTTTTAAATATGAAGCCGCCAGAGATATTGTCTATGCTTGAGGAAGCTGCAGGGACAAGAATGTACGAGACAAAGAAAGAGGCTGCTTTGAAAACACTCGAGAAGAAGCAGAGTAAGGTCGATGAGATCAACAAGCTTCTTGATCAGGAGATACTGCCTGCCTTGGAGAAGTTAAGGAAAGAAAGGACGCAGTACATGCAATGGGCTAATGGCAATGCTGAGTTAGATAGGCTGAGAAGATTTTGTATTGCTTACGAGTATGTTCAAGCGGAGAGGATTAAAGACAATGCTACCTCTGAGGTGGAACAAGTAAAAGCCAAGATAGCTGAGATTGATGACATGGGTAAGACAACTCAGGTCGAAGTAAAGGAAATGGAGACTAAAATAGCTCAGTTGACTGCTGAGAAGGAANCAAGCATGGGTGGAGAAGTGAAATCTCTGTCAGAGAAGGTAGATGCACTTTCCCAGAATCTTGTGAGGGAAACATCTGTACTAAATAATAAAGAAGACAATATGAGGAGTGAAGAAGCCAACAAAGAAAAAATTGTGAAAAATATTGAAGAATTGAAGCAATCTGTCGAAGAGAAGGCNTCTGCTGTTAAAAAGGCTGAAGAGGGAGCAGCTGATTTGAAAAATAGAGTTGATGAGCTCTCAAAGAGTCTGGAGGAGCATGAAAAGGAATACCAGGGTGTTTTAGCTGGCAAGAGCAGTGGTAATGAGGAGAAATGCTTAGAGGATCAACTAGGTGATGCAAAGATAGCAGTTGGGAGTGCTGAAACAGAATTGAAACAGCTGAAAACCAAAATTAGCCATTGTGAAAAGGAACTGAAAGAGAAAAAAAATCAATTAAGGTCAAAACGTGAAGAAGCTATTTCTGTAGAAAATGAGCTCAACGCAAGGAGAAAAGATGTGGAAAATATCAAAATAGGATTGGAGTCTCTTCCTTATAAAGAGGGTGACATGGAAGCTTTGCAAAAGGAGCGTGAATCTGAGATGAATTTGGTTCAAAAGTGTAAGGATAAGATACGCAATATGTCAGCATACTTGGCTAATGTTGAATTTACATACCGGGATCCTGCCAAGAACTTTGATAGGTCAAAGGTGAAGGGTGTTGTTGCAAAACTCATCAAAGTGAAAGATAGGTCCACAATGACTGCCCTAGAGGTTACAGCTGGTGGAAAGTTGTTTAATGTTGTAGTTGACTCAGAAAATACTGGAAAACAACTACTACAGAATGGCAATCTTAGAAGAAGAGTGACAATTATACCTTTGAACAAAATACAATCCCATATTGTTCCCTCCAGAGTTCAACAAGCTGCTGTTAGATTGGTGGGCAAGGAGAATGNTGAAATTGCACTTTCTTTGGTCGGTTATGAAGAAGAAATAAAGAGTGCAATGGAATATGTCTTTGGTTCAACCTTTGTTTGCAAAACCATTGATGCTGCAAAGGAGGTGGCATTTAATCGGGAGATTCACACCACAAGTGTCACTCTTGAAGGAGATATATTTCAGCCAAGTGGTCTTCTGACTGGGGGAAGCCGAAAGGGCGGTGGTGATCTTTTGAGGCAACTTCATGATTTAGCTGAGGCTGAGTCAGAACTTTCAGTGCATCAAAGAAAGTTGTCAGAGATTGAGGCAAAGATTACAGAGCTCCTTCCTCTTCAGAAAAAATTTAAAGACCTAAAAGCACAATTAGAACTAAAGTCATATGATCTTTCATTGTTTCAGAGTAGAGCTGAGCAAAATGAGCATCATAAGCTTGGAGAATTAGTGAAGAAGATTGAGCAAGATCTTGAAGAAGCAAAATCTGCAGTTGAGGAAAAACAACTTTTATTTGAGAACTGTGTCAAGACTGTTTCATCTCTTGAGAAATCAATTAAAGAACATGACAATAATCGAGAAAGTAGGCTAAAAGGCTTGGAGAAAAAGATAAAGTCAATCAAATCCCAAATGCAGTCATCTTTAAAAGATCTGAAGGGACATGATAATGAAAAGGAGAGGCTTGTAATGGAAATGGAAGCTGTTATCCAGGAGCAAGCTTCGCTGGAGAATCAATTAGCATCATTGGGAACACAGATTAGTAATNTTTCCTCAGATGTAGAAGAACAAAGATCCACGGTTGCTGCCGCAAGGAATAATCTTGATCAAGTTCAATCACAGCTGAATGAAGTTCGCCAGAAAATGAAGCAATGTGACAAGGAAATCAATAGTATTATTAAAGAGCAGCAAAAGCTTGAACATAAACTCAGTGAGAGTAATCTTGAAAGGAAGAGGATGGAAAATGAGGTAAAACGCATGGAGATGGAACAGAAAGACTGTTCTGTAAGGGTGGATAAACTGATAGAGAAGCATGCATGGATTGCTTCTGAAAAACAGTCGTTTGGTAGAAGTGGGACTGATTATGATTTTTCTTCTCGTGATCCTATTAAAGCAAGGGAAGAACTTGAGAAACTTCAGGCTGAACAATCTGGGCTTGAAAAAAGGGTGAATAAGAAAGTAATGGCAATGTTTGAGAAGGCAGAGGACGAGTACAATGATTTGATGTCAAAGAAAAATATAATTGAGAATGACAAGTCTAAAATCAAGAAGGTGATTGAAGAGCTAGATGAGAAAAAGAAAGAGACCCTAAATGTTACCTGGATCAAAGTGAATAATGACTTTGGTTCCATCTTTTCTACACTATTACCGGGCACAATGGCTAAGTTAGAACCTCCAGAAGGATGCAACTTTCTTGATGGTCTTGAGGTTCGCGTTGCATTTGGAGGTGTATGGAAACAGTCATTGTCTGAACTGAGTGGAGGTCAGCGATCATTGCTTGCACTTTCTNTGATTCTGGCACTGCTGCTTTTTAAACCTGCTCCACTTTACATCTTGGATGAGGTTGATGCAGCCCTTGATTTGAGCCATACACAAAACATAGGGAGAATGATAAAGACTCACTTTCCACACTCCCAGTTCATTGTGGTCTCACTGAAGGAAGGCATGTTCAATAATGCAAATGTTCTTTTCCGGACAAAATTTGTAGATGGTGTTTCAACTGTTCAGCGGACTGTTGCGGCTAAGCAAAGCAAGTGATACATTGGGATTATTCTTGCATATGTTAGAAGTCTTGCAAATAATCAAATCTGTTCATCCTCTGGGAAAATAGAAATGAAGGCAGCGCCTGTAATTTAATGCTTATGTAATTCGAACATCAGTATGGGGCCCTATGCCAGTATTTTGTTTCTACAATGTATAAAATTGTTATTGTTATTCCTCCTAATGTAACTAATGATATAGCACTAACGAGGATGGTGGTGAC

Protein Sequence

>Glyur001234s00026346.1
MYIKEICLEGFKSYATRTVVPGFDPFFNAITGLXGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSDRSRSPLGYEDHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKERTQYMQWANGNAELDRLRRFCIAYEYVQAERIKDNATSEVEQVKAKIAEIDDMGKTTQVEVKEMETKIAQLTAEKEXSMGGEVKSLSEKVDALSQNLVRETSVLNNKEDNMRSEEANKEKIVKNIEELKQSVEEKASAVKKAEEGAADLKNRVDELSKSLEEHEKEYQGVLAGKSSGNEEKCLEDQLGDAKIAVGSAETELKQLKTKISHCEKELKEKKNQLRSKREEAISVENELNARRKDVENIKIGLESLPYKEGDMEALQKERESEMNLVQKCKDKIRNMSAYLANVEFTYRDPAKNFDRSKVKGVVAKLIKVKDRSTMTALEVTAGGKLFNVVVDSENTGKQLLQNGNLRRRVTIIPLNKIQSHIVPSRVQQAAVRLVGKENXEIALSLVGYEEEIKSAMEYVFGSTFVCKTIDAAKEVAFNREIHTTSVTLEGDIFQPSGLLTGGSRKGGGDLLRQLHDLAEAESELSVHQRKLSEIEAKITELLPLQKKFKDLKAQLELKSYDLSLFQSRAEQNEHHKLGELVKKIEQDLEEAKSAVEEKQLLFENCVKTVSSLEKSIKEHDNNRESRLKGLEKKIKSIKSQMQSSLKDLKGHDNEKERLVMEMEAVIQEQASLENQLASLGTQISNXSSDVEEQRSTVAAARNNLDQVQSQLNEVRQKMKQCDKEINSIIKEQQKLEHKLSESNLERKRMENEVKRMEMEQKDCSVRVDKLIEKHAWIASEKQSFGRSGTDYDFSSRDPIKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWIKVNNDFGSIFSTLLPGTMAKLEPPEGCNFLDGLEVRVAFGGVWKQSLSELSGGQRSLLALSXILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAAKQSK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01234	32659	41525	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007076 mitotic chromosome condensation

GO:0051276 chromosome organization

cellular_component

GO:0000796 condensin complex

GO:0005694 chromosome

molecular_function

GO:0005515 protein binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001234s00026346.1	PF02463.14	SMC_N	2	1161	2.30E-53
Glyur001234s00026346.1	PF06470.8	SMC_hinge	518	638	4.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.164
SRR1783600	control	2.168
SRR1783602	moderate drought stress	1.305
SRR1811619	moderate drought stress	1.279

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.433
DRR006520	Root Summer glycyrrhizin high producing strain	2.314
DRR006521	Root Winter glycyrrhizin high producing strain	0.788
DRR006522	Root Winter glycyrrhizin high producing strain	0.803
DRR006523	Root Summer glycyrrhizin low producing strain	0.978
DRR006524	Root Summer glycyrrhizin low producing strain	0.943
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.735
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.711

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.611
SRR2868004	Drought Stress (root)	5.050
SRR2967015	Control (root)	7.015

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.640
SRR9715740	Leaf	0.065
SRR9715741	Leaf	0.750
SRR9715739	Root	0.106
SRR9715742	Root	0.838
SRR9715743	Root	0.634

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.906
SRR8749028	MeJA induced 9h	24.971
SRR8749029	MeJA induced 9h	14.581
SRR8749030	Uninduced	7.898
SRR8749031	Uninduced	12.529
SRR8749032	Uninduced	5.133

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.994
SRR8400027	Control - Root	6.222