Gene detail

Gene detail information of Glyur001233s00029986.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G30470.1	high-level expression of sugar-inducible gene 2
NR	KHN18657.1	B3 domain-containing transcription repressor VAL1 [Glycine soja]
Swissprot	tr\|Q8W4L5\|VAL1_ARATH	B3 domain-containing transcription repressor VAL1
trEMBL	tr\|K7MQ28\|K7MQ28_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G05840.3}

Sequence

Transcript Sequence

>Glyur001233s00029986.1
ATGGGTTCGGACATTGACGTTGTCAAAGCTTCGTGCGTCCACGAATGGAAGAAGGGGTGGCCTCTGCGATCTGGTGGATTTGCTCAGCTATGCTGCAAGTGCGGATTTATGGAGGAAGGGAAGCGTGATATCCTTGACCCATTATCTGCTTATGAGAGTTCAGTTTTCTGTAATAAACTCCACCGTCAACAAACTGGTTGGCGGGAATGTAACTTTTGCGACAAGCCTATCCACTGTGGATGCATAGTCTCTAGATCTTTGTTCGAGTATCTTGACTTTGGTGGCATAGGTTGTGTTAGCTGTGTAAATACTTCCCAACTTAATACGATAAGGAATACTGAAAATCCTAATGGATCTGTTTCATTGACCCAAAATAGTGCAAGTGATCGACATTCTGCTCATTTTGATGGCAGACTGTTTGTGGGCAGTGTTGATGAAGGAAAACTCATGCAGTTGTGCAGAGTTGTTGAAGCTACTGAATCCAGCCGTTTGAATCATGCTCAAAGAGATGGTAGTATGATTACATGTAATGGAAAAAACAACAAAGAAGTNAAGTCTTCATTCAGGGAAGTGGACACTGGATTTTCAACTACGATGAAACCTTCTGTTCAGTCATTAACATTTGCTAGATTAGAAAATAATAGATCAACATGGGAGATCAAAAACATACATGAATCAACTGCAAAGCCATCTTTGAGTATGTATTTGGGAAAGCCATCAGGGAACAACTCTGTCCCAGCTTCTGTTGGAGAGAATGTAGAAGGAAGACTTGAGGGCAAAGCATCTCCTCCCTTTCATCAAGGGCCGAGATCTCGCCCTATATTGCCCAAACCGTTGAAGACTGGGCTTACCATGAATGTGGAAATTGATAAAAGCACAGTTTCTCAATCACGTATCGCCCGGCCACCTGCTGAAGGGAGGGGCAAGAATCAGTTACTTCCTAGATACTGGCCCAGGATTACTGATCAAGAGCTGGAGCGATTGTCTGGGGATTTGAAGTCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGGATTGGTCGTCTTGTTCTCCCAAAAGCATGTGCTGAGGCTTATTTTCCTGCTATTTCACAATCTGAAGGTCTTCCTTTGCGGATTCAAGATGTGAAGGGGAATGAATGGACGTTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGTCCATGCAATTACGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGGGGCAAACTTGTTATGGGTTTCAGAAAGGCATCAAATTCTATAGATACACAGGATGCTTCTACATCTACACATTCTAATGGTGTTTCGGCAAAGGGAACCACTTTTTCTGGTGGAACGGAGAATATGGCATCTGGAAGTAATTATGCNGATCTTCTCCATTCGACAAAAGGGAATGACGAACTTCACTTAAATGGACATCCAGAACATCTGCATTTGGGTACTGGAGTTGCTGGNTTGCTTAAAACTGAAAATGGTGAGATGACAAACAATCATTCACTGCAGCAACAAATTTCAGTTTTAGAGAAGAAGAGGACTCGCAATATTGGGCCAAAAAGTAAGAGGTTGCTCATTGATAATGAAGATGCTATGGAGTTGAGACTTACATGGGAAGAAGCGCAGGACTTGCTTCGTCCACCGCCTAGTGTCAAACCAAGCATTTTCACAATTGAGGACCAAGTAATTGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACAATATTCAGCACCTGTTCATCTGGGGGGAAGGAACAATGGGCTCAATGCGATGACTGCACTAAATGGCGGAAGTTGCCAGTTGATGCTCTTCTTCCTCCCAAGTGGACTTGTTCTGAAAATGTTTGGGATACAAGCAGGTCTTCGTGTTCTGCACCAGAGGAGCTGAGTTCGAGGGAATTAGAAAATCTTCTTAAANCCAACAAAGATTTTAAGAAGCGACGAATTGTAGAAAACAGCAAGTTGATCCAAGAACATGAGCCTTCTGGCCTAGATGCTCTTGCCAGTGCAGCAGTTTTAGGAGAAAATCTCGTTGACCATGCCGAGTCATCAGCTGGAGCCACCACCAAACATCCCAGACACCGTCCCGGCTGCTCTTGTATTGTGTGCATTCAGCCCCCAAGTGGGAAGGGGAGACACAAGCCGACATGCACCTGCAACGTGTGCATGACCGTGAAGCGCCGGTTCAAAACCCTTATGCTACGGAAGAAGAAGCGCCAATCAGATGCTGCCGCCGCTACCCAGAAAGATCATATTCGCGAAAGAGACGAGTCAGATACCAATGGAGCATCAAGAGATGATGCAAGTCATTTGGAGAAAGAGGGAGGACTAAACAAAGGTCAAGCCGAGGTGGGCGAGTCAAGTTCTGGACAGATAGATCTGAATTGTCATCCCAACCGTGAAGACATGCAAGTGGATATCACAGGACTTAGCATGTCAAATCATCATAATCTTGAAACAAGAAGCAATCCTGCAAGGGAACATGTGAATCAAAATGGTGGTCTAAGAAGCTTTAATACTGAACTACAATCTGGTCAGCATTCTTCTTTGCTCACTCAATCTAATGGAGAAGGTCAGAGATACTTCTCTGATGAAAGATGCTTTACATCCATTGCGTGGAATAAAGATAGAAGAGATNAGNTATACAGTCATACCNATCAAAGTCAAGACAATCTATCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01233	43702	50299	+

Gene family

Gene family	subfamily
Transcription Factors Family	B3
EAR motif-containing Proteins	B3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001233s00029986.1	PF02362.16	B3	340	440	1.80E-16
Glyur001233s00029986.1	PF07496.10	zf-CW	609	652	6.30E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.226
SRR1783600	control	10.218
SRR1783602	moderate drought stress	7.252
SRR1811619	moderate drought stress	7.293

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.609
DRR006520	Root Summer glycyrrhizin high producing strain	6.517
DRR006521	Root Winter glycyrrhizin high producing strain	6.405
DRR006522	Root Winter glycyrrhizin high producing strain	6.232
DRR006523	Root Summer glycyrrhizin low producing strain	5.954
DRR006524	Root Summer glycyrrhizin low producing strain	5.989
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.516
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.329

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.492
SRR2868004	Drought Stress (root)	17.508
SRR2967015	Control (root)	18.528

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.307
SRR9715740	Leaf	26.401
SRR9715741	Leaf	15.138
SRR9715739	Root	2.249
SRR9715742	Root	7.039
SRR9715743	Root	7.277

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.857
SRR8749028	MeJA induced 9h	22.594
SRR8749029	MeJA induced 9h	7.155
SRR8749030	Uninduced	12.751
SRR8749031	Uninduced	10.079
SRR8749032	Uninduced	6.346

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.399
SRR8400027	Control - Root	11.969