Gene detail

Gene detail information of Glyur001233s00029977.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30490.1	1.00E-131	cinnamate-4-hydroxylase
NR	AID51447.1	0	cinnamate 4-hydroxylase 2 [Astragalus membranaceus]
COG	YP_004303682.1	2.00E-23	cytochrome P450 [Polymorphum gilvum SL003B-26A1]
Swissprot	tr\|O24312\|TCMO_POPTM	0	Trans-cinnamate 4-monooxygenase
trEMBL	tr\|A0A075EAV0\|A0A075EAV0_ASTME	0	Cinnamate 4-hydroxylase 2 {ECO:0000313\|EMBL:AID51447.1}

Sequence

Transcript Sequence

>Glyur001233s00029977.1
ATTTCGAATTCTCAATTTACCCTTCACTCTCGCCATGGATCTCCTCCTTTTAGAGAAGATCCTCACCACACTCTTCGTTGCGGCCGTTGTCGCCTTCATTGTCGCCAAACTCCGCGGCAAGCGCTTCAAGCTGCCACCAGCACCCCGGCCGATGCCAATCTTCGGAAACTGGCTCCAAGTCGGCGACGATCTCAACCACCGGAACCTCACCAACCTAGCGAAGAAATTTGGCGACATCTTCCTCCTCCGCATGGGGTAGCGCAACCTGGTGGTTGTTTCGTCGCTGGAGCTCGCGAAGGAGGTGCTCCACACCCAGGGCATGGAGTTCGGCAGTATCGTGGAGGTTGGGAGGATGAGGCGGCGCGGGTGGTCGAGGACGCTCGTCGGAACCCTGAGTCGGCGACTAGCGGGATCGTGTTGTGGCGGCGGTTGCAGCTTATGATGTACAACAACATGTACATGATCATGTTCGATAGAAGGTTCGAGAACAAGGAGGACCCTTTGTTTCAGAAGCTCAGGTTAAGGAGTGACGGTTACAACTCTTCAAGGACTATTTCGTCGAAGACAGAAAGAATATTGGGAGTACCAAGAGAACTGATAATGAAGGACAAGTGTGCCATCGATCACATTTTGGATGCCCAGAAAAAGGGCGAGATTAGCGAAGACAACGTTCTTTACATTGTTGAGAACATTAACGTTACTGCAATTGAGACAACTCTATGGTCAATTGAATGGGGCATTGCAGAGCTTGTGAACCACCCAGAGATCCAGAAGAAGGTAAGGGGTGAGATTGACAGGGTTCTTGGACCTGGACACCAAGTGGCAGAGCCAGATACCCACAAGCTCCCTTACCTGCAAGCTGTGATCAAGGAGACACTTCGTCTTCGAATGGCGATTCCACTCCTTGTCCCACACATGAACCTCCATGATGCAAAGCTTGGTGGGTATGACATTCCAGCTGAGAGCAAGATCATGGTGAATGCATGGTGGCTTGCCAACAACCCTGCCCATTGGAAAAACCCTGAGCAGTTCAGGCCTGAGAGGTTCTTGGAGGAAGAGTCCAAGGTTGAGGCCAATGGGAATGATTTTAGGTACCTTCCCTTTGGTGTTGGGAGAAGGAGCTGCCCTGGAATCATTCTTGCATTGCCTATACTTGGCATCACTTTGGGGCGTTTGGTTCAAAATTTTGAGCTCTTGCCTCCTCCGGGACAGTCCAAGCTTGATACTACCGAGAAAGGAGGGCAGTTTAGTTTGCACATACTGAAACATTCTACCATTGTCTTAAAGCCAAGATCATTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01233	941	10941	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP73A5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00487	CYP73A	EC:1.14.13.11	Degradation of aromatic compounds	map01220
			Phenylalanine metabolism	map00360
			Ubiquinone and other terpenoid-quinone biosynthesis	map00130
			Phenylpropanoid biosynthesis	map00940
			Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
			Flavonoid biosynthesis	map00941

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001233s00029977.1	PF00067.17	p450	203	423	1.70E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.023
SRR1783602	moderate drought stress	0.072
SRR1811619	moderate drought stress	0.029

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.360
DRR006520	Root Summer glycyrrhizin high producing strain	0.347
DRR006521	Root Winter glycyrrhizin high producing strain	0.085
DRR006522	Root Winter glycyrrhizin high producing strain	0.083
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.143
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.132

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.049
SRR2868004	Drought Stress (root)	0.872
SRR2967015	Control (root)	0.701

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.395
SRR9715740	Leaf	0.071
SRR9715741	Leaf	0.122
SRR9715739	Root	0.057
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.024
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.373
SRR8400027	Control - Root	0.283