Gene detail

Gene detail information of Glyur001232s00031537

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40190.1	6.00E-50	RNA ligase/cyclic nucleotide phosphodiesterase family protein
NR	AFK36516.1	7.51E-102	unknown [Lotus japonicus]
COG	YP_003835176.1	4.00E-10	hypothetical protein Micau_2054 [Micromonospora aurantiaca ATCC 27029]
trEMBL	tr\|I3S8C4\|I3S8C4_LOTJA	3.00E-102	Uncharacterized protein {ECO:0000313\|EMBL:AFK36516.1}

Sequence

Transcript Sequence

>Glyur001232s00031537.1
GTTACCTCTCGAATACATCAATCGTACTTTCCTTTCCCTTCCCTCACTTCTTTCTCCCTTTTCACAACTACAACCAACAACAATAACAACAAAACCACCCTCTCTCTCTGGCCGTTGAGTCTCCGGTTTCCCGTTTCAACCGGATCGGTTTAGAAAAACCGGGTTTCCCTGACCCCTTCACACCCCACTTCAATTCCCCCATTCCCACCTCTGCAAGTTCCAACCTTTCTCCAGACTTACATCGAATTTCCATCCGGGTCGGGTCCCAGATCTCGGCTGGTTTCGGTTCCGGGTTCCGATGTCTGAACAACAGCAACAAGGTGGTGGTGGTGGTGGTGGTGGGTACGCGATAGAGCTATACATGGACCCAGCGCTGGAGAATCAGGTGCTGAAAGCGTGGAACGTGGTGGCTCGGAGGCAGATCAGCACAGAGTTGATAGAGATGGGTTCACGCCCCCACATCACCCTCTTCTCCACTCCCTACCTTCTAGAACCTTCCAGAATGATCGAGCCTCTCCTCAGGTCACTCTCCTCCAACCACCACCCTTTCCCTCTCTCCTTCTCCTCCCTCGGCGCCTTCCCCAACAACGCCGCCGACAACATCCTCTTCCTGTCACCGACACCCTCACTCTCTCTCCTCCACTTTCAGTCACAGCTCTGTGACGCTATCAGAACCGAAGGCATCGATNTCCCCGATGACTACTCCCTCGGTAACTGGATACCCTTCTGCTCGGTTGCCCACAACGTCCCGAAAGCCAGAATGGCAGAGGCTTTCTCTCTCTTGAGGGACCTGAAGTTGCCGGTTTCCGGCTACGCTGTTGAAATTGCCCTCGTGCAGTTCTCTCCGGTTCGCGAGCTCTGCTCCTTTGTGNTCGGCAACACCGTTGACCCCTGAAGTTTAGATTTTTTGGGTCTGAGAAGAGTTTCCGGAAAGCTGGACCTCTTCAAGTTCATACGACCGATCTTATGTTCAGTTCGCCTATTGACTGGCTGGAAGTAATGATATTTGCACACCCATTAATTTCCAACACCCATCTAACATCTATATCTTCTTATCAGACCACCCATTTATCCCATTCATCACTCATCTCTCTCAAGATGTATATTAGCATTTGGATGTCTAAGAATCATTTTTAAAGACTAAATTATGTCAGCATCCAATGTTAGGCCTAAATGGTTCAATTTTTTTTTTCTTTAGCAAGCTATTTGAATTTTGTGTGTCCATAAATTTCAGATCACTTTGACTTAGTTTTCCTCTCTCAGATTTTCTCCTGGCAGTTGTCTCAGGTCCTCTGTGTCATCCTGTCTGTTGGGAGTATATGAAGAAGTATAGTAGTAGAGCATGAAATGCATGCTTGCTGCCTAAAGGGGAATTGCTGAGTAATGCTACTTCACACTAACTGTTAATATGACTGCATATGAGTAATGATTTTTACCATAGATTCTCAAAATTTTCCCCCTTGAGTTAACTATGAGGCAGACATATTCACAGTTGTGACTTTTGAGGGATTGTGCTGGAACAGATTGTGTAAATAGCATTTCTCATATATCCTCCCATCTTTCAGTATTTATAATTCATCAATTGTAAATCCATACTTTGTAGATTTTTAAGCAGAGTTAGTACTTCAGTAGGTGCTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01232	78432	80898	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001232s00031537.1	PF13563.1	2_5_RNA_ligase2	52	180	2.70E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.269
SRR1783600	control	16.328
SRR1783602	moderate drought stress	18.024
SRR1811619	moderate drought stress	17.231

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.095
DRR006520	Root Summer glycyrrhizin high producing strain	12.958
DRR006521	Root Winter glycyrrhizin high producing strain	4.426
DRR006522	Root Winter glycyrrhizin high producing strain	4.115
DRR006523	Root Summer glycyrrhizin low producing strain	5.138
DRR006524	Root Summer glycyrrhizin low producing strain	5.725
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.021
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.615

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.781
SRR2868004	Drought Stress (root)	10.003
SRR2967015	Control (root)	11.024

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.773
SRR9715740	Leaf	10.449
SRR9715741	Leaf	8.844
SRR9715739	Root	22.725
SRR9715742	Root	14.357
SRR9715743	Root	16.699

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.097
SRR8749028	MeJA induced 9h	4.356
SRR8749029	MeJA induced 9h	2.889
SRR8749030	Uninduced	1.601
SRR8749031	Uninduced	0.370
SRR8749032	Uninduced	0.970

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.027
SRR8400027	Control - Root	20.027