Gene detail

Gene detail information of Glyur001232s00031532

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G28050.1	3.00E-30	nodulin MtN21 /EamA-like transporter family protein
NR	XP_003553929.1	2.00E-69	PREDICTED: WAT1-related protein At3g28050-like [Glycine max]
Swissprot	tr\|Q94JU2\|WTR18_ARATH	4.00E-42	WAT1-related protein At3g28050
trEMBL	tr\|V7C161\|V7C161_PHAVU	2.00E-67	Uncharacterized protein {ECO:0000313\|EMBL:ESW23103.1}

Sequence

Transcript Sequence

>Glyur001232s00031532.1
CAGAGAACCGTTCTACACTGTAGCAGCCACATCACTATACTCCGATGCTAGAAAAATTTAAAAACTGTTCTTAAGCGTTTTTAGAATTTAAGAACAATGCATCGGAGATGGTCTAAGGTTTTGTGTTGTGGCAGTGTCTGAGCCCCAAAAAAAGTGGGAAGTCAGAGAGGGATGGCAAGAGGGTGGTTCTTTTACAAGGATTTGCTGCCAGTTGTGGTGATCATAGGGAACGAGTGCAACGACATGGGCTTGTTCACTTTGTTCAAAGTAGCAACACTGCAAGGGATGAACAACCATGTCTTTGTTGCCTATGCTTATGCTGTTGCCACTATNACACTCCTTCCTGTGACTCTTCTCAACAGAAGATCAAGAGTGGTTCCTCCACTCAGTTTCTCCATAATATCCAAAATTGTGCTTCTTGGGGCTATAGGGAGTACATCTCAGATTCTGGGGTATGCTGGTATTAGTTACAGTTCACCAACACTTGCTTCATCAATTGGAAATCTGGTGCCTGCTTTCACTTTCATCNTAGCTGTCGCTTTCAGGATGGAAAAGTTAGCTGCAAAAAGTAGNAGTAGTCAAGCTAAGGGAATATCTGGAAAGTTAGTGGGGAATGTAGTTTATGCCTGGTCACTGCGCTTAAAGGGGCCTGTCTTTGTAACATCATTCAAGCCACTCCAAATCTTTATTTCTGTTGCCATGGGTGTTATGTTCCTTGGNGATACTCTTCATGTTGGAAGTATAATTGGAGGCACAATAATATCAATTGGCCTTTATGCTGTATTGTGGGGCAAAGCAACAGAAGAGACAGATGAAGAAGATTTTGGTANCCTGGAATCATCACAAACCACAGAGCATGCTCCTCTCTTACAAAGCTACAGAACTGATCAAACTTCTGAAAAGCTAACAAATGGAAATGTTTAAAACAGACACATAACATAGAAAACCATAAAAGAGCTTGTTGAGTACCGCAAGCTATTGCCCCCTCTAAAGGACATTGAAAATGAAGATTTTGGGATGAGGTTGCACTCAACNAAAGTTCTTTCTTGTTGCCTCTCACCACTATGCAAGGCTTCCAATACATACATAGCTTATACTATTACTTTCATGCTTGATGATATATGTGCACACTTTAGTTGTGCCTTAGAATGAAGCCTACAACCTTTTCCTCAAGTGTTTTATGGAAAAGGTGACATTTTTCTGTTTAATAGTGTGTCATTCTCAAAGGGGAGATGTACAGGTTTAAGTGTATGTATGTATGTATGTATGTATGTATATATGTGTTAATTTGTCTGAACAAGAAGTGAAGTTAGTTTCCATTTCTGCATTTTAAAGCATCTACTCTTCACCCTCTTCCTACACGGTGTATTCCTTGGAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01232	41934	46021	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001232s00031532.1	PF00892.15	EamA	26	131	8.40E-07
Glyur001232s00031532.2	PF00892.15	EamA	26	124	1.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	122.359
SRR1783600	control	120.868
SRR1783602	moderate drought stress	242.282
SRR1811619	moderate drought stress	239.365

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	91.991
DRR006520	Root Summer glycyrrhizin high producing strain	92.846
DRR006521	Root Winter glycyrrhizin high producing strain	9.827
DRR006522	Root Winter glycyrrhizin high producing strain	9.130
DRR006523	Root Summer glycyrrhizin low producing strain	84.091
DRR006524	Root Summer glycyrrhizin low producing strain	83.718
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.886
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.397

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.985
SRR2868004	Drought Stress (root)	11.665
SRR2967015	Control (root)	26.947

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.745
SRR9715740	Leaf	24.469
SRR9715741	Leaf	38.787
SRR9715739	Root	5.058
SRR9715742	Root	16.397
SRR9715743	Root	15.501

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.776
SRR8749028	MeJA induced 9h	5.028
SRR8749029	MeJA induced 9h	3.419
SRR8749030	Uninduced	2.886
SRR8749031	Uninduced	1.504
SRR8749032	Uninduced	1.275

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	101.923
SRR8400027	Control - Root	91.154