Gene detail information of Glyur001230s00027577 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G03350.1 | 2.00E-76 | Protein of unknown function, DUF538 |
| NR | XP_003613966.1 | 2.11E-114 | hypothetical protein MTR_5g043190 [Medicago truncatula] |
| Swissprot | tr|Q9M015|Y5161_ARATH | 3.00E-57 | Uncharacterized protein At5g01610 |
| trEMBL | tr|G7JWQ2|G7JWQ2_MEDTR | 8.00E-115 | Uncharacterized protein {ECO:0000313|EMBL:AFK37686.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01230 | 65070 | 67695 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001230s00027577.1 | PF04398.7 | DUF538 | 61 | 169 | 1.30E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 62.437 |
| SRR1783600 | control | 62.587 |
| SRR1783602 | moderate drought stress | 24.778 |
| SRR1811619 | moderate drought stress | 24.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.421 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.511 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.128 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.125 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.495 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.270 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.305 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.762 |
| SRR2868004 | Drought Stress (root) | 13.897 |
| SRR2967015 | Control (root) | 12.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.697 |
| SRR9715740 | Leaf | 5.610 |
| SRR9715741 | Leaf | 5.576 |
| SRR9715739 | Root | 12.366 |
| SRR9715742 | Root | 6.051 |
| SRR9715743 | Root | 5.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 114.175 |
| SRR8749028 | MeJA induced 9h | 40.526 |
| SRR8749029 | MeJA induced 9h | 53.682 |
| SRR8749030 | Uninduced | 2.074 |
| SRR8749031 | Uninduced | 0.394 |
| SRR8749032 | Uninduced | 2.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 55.904 |
| SRR8400027 | Control - Root | 61.892 |