Gene detail information of Glyur001230s00027575 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32175.1 | 7.00E-90 | PNAS-3 related |
| NR | XP_003518749.1 | 1.29E-140 | PREDICTED: putative exosome complex component rrp40-like isoform X1 [Glycine max] |
| COG | YP_004616245.1 | 3.00E-06 | K-like, type 1, subgroup [Methanosalsum zhilinae DSM 4017] |
| trEMBL | tr|I1JE93|I1JE93_SOYBN | 5.00E-141 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G12480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01230 | 50684 | 56603 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.899 |
| SRR1783600 | control | 12.094 |
| SRR1783602 | moderate drought stress | 9.700 |
| SRR1811619 | moderate drought stress | 9.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.950 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.885 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.661 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.535 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.257 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.918 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.387 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.249 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.731 |
| SRR2868004 | Drought Stress (root) | 12.650 |
| SRR2967015 | Control (root) | 12.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.584 |
| SRR9715740 | Leaf | 6.448 |
| SRR9715741 | Leaf | 5.086 |
| SRR9715739 | Root | 13.677 |
| SRR9715742 | Root | 11.089 |
| SRR9715743 | Root | 14.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.177 |
| SRR8749028 | MeJA induced 9h | 11.877 |
| SRR8749029 | MeJA induced 9h | 26.465 |
| SRR8749030 | Uninduced | 5.173 |
| SRR8749031 | Uninduced | 2.915 |
| SRR8749032 | Uninduced | 3.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.944 |
| SRR8400027 | Control - Root | 14.019 |