Gene detail information of Glyur001230s00027574 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G69390.1 | 3.00E-75 | homologue of bacterial MinE 1 |
| NR | XP_007157698.1 | 4.69E-139 | hypothetical protein PHAVU_002G090800g [Phaseolus vulgaris] |
| Swissprot | tr|Q9C4Z7|MINE1_ARATH | 2.00E-93 | Cell division topological specificity factor homolog, chloroplastic (Precursor) |
| trEMBL | tr|V7CHN3|V7CHN3_PHAVU | 2.00E-139 | Uncharacterized protein {ECO:0000313|EMBL:ESW29692.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01230 | 46274 | 48537 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001230s00027574.1 | PF03776.9 | MinE | 125 | 192 | 8.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 65.000 |
| SRR1783600 | control | 67.046 |
| SRR1783602 | moderate drought stress | 43.303 |
| SRR1811619 | moderate drought stress | 41.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.374 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.783 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.184 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.740 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.812 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.374 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.570 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.049 |
| SRR2868004 | Drought Stress (root) | 22.544 |
| SRR2967015 | Control (root) | 19.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.966 |
| SRR9715740 | Leaf | 22.511 |
| SRR9715741 | Leaf | 19.067 |
| SRR9715739 | Root | 12.345 |
| SRR9715742 | Root | 11.382 |
| SRR9715743 | Root | 13.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.617 |
| SRR8749028 | MeJA induced 9h | 7.185 |
| SRR8749029 | MeJA induced 9h | 7.801 |
| SRR8749030 | Uninduced | 2.534 |
| SRR8749031 | Uninduced | 0.507 |
| SRR8749032 | Uninduced | 0.317 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.342 |
| SRR8400027 | Control - Root | 32.891 |