Gene detail

Gene detail information of Glyur001230s00027566.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G03340.1	2.00E-49	WRKY DNA-binding protein 3
NR	XP_003517814.1	6.35E-142	PREDICTED: probable WRKY transcription factor 4 [Glycine max]
Swissprot	tr\|Q9XI90\|WRKY4_ARATH	5.00E-67	Probable WRKY transcription factor 4
trEMBL	tr\|I1J5V4\|I1J5V4_SOYBN	2.00E-142	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G06550.1}

Sequence

Transcript Sequence

>Glyur001230s00027566.1
ACTTTTTGTTTGCTGATTTCTCTTTCAGATCCACCAAACCCAACACACCCAAAAAAACGCAAACATGAAACCATTAGACAAACAGAACAGAAATGTTTGAAACTTTTTGAGCCTTTGTTTGTTGTGTGAAGACAACNAGACACAGAAAGAGAGAAAGTTGCCAAAGTTTGAAGCTTAATTTCTTTCTATTGACCCAAAAAAAAAAATTTCTTTCTTTCAAATTGCTTTTTTGTCTCAGTGATAAAAGTCAAACCAAGTATGTTCAACGGTGGGAATGGAGACCGACCACCGTGGAAGGAAGAAGCGGCGGCGGGTGGTGGGGGCCCACCGGTGCGACCAACCATCACTCTGCCGCCACGTACGGACACCCTTTTCAACGGTGGTCTCAGCCCCGGTCCCATGACCCTTCTCTCTAGTTTCTTCTCCGACGGTGGCGACGACTGCAAGTCCTTCTCGCAGCTTCTCGCCAGCTCCATGATGTCTCCGGCGGCGCCCCCTGCCGGCGTGCTTGATTCACCTGGCTTCTTTTCACCACAGGTTCCTGCAGCTACTTCCACCTATACCACGCAACCGCAGATGCCACCATCAATGGAAGGCTCTCAGGCAGCAATGACAGAATCCACCAATTACTCTCTCCCCGAACAAAGGCTGCAACAGTCTTCTTCGTTGAACGTCGATAAGCCTGCTGATGATGGCTACAACTGGAGGAAGTATGGGCAGAAACAGGTGAAGGGTAGCGAGTTTCCTCGGAGTTATTATAAGTGCACGTGTCCTAACTGTCCGGTCAAGAAAAAGGTCGAGCGCTCACTTGAGGGGATTGCTGATTCATCTTATCAAGGGATAACTACTAATTCGATGTCTAAGATGGATCCGGAATCTAGTCAGGCAACAGCTGAACATCTATCAGGAACAAGTGACAGCGAGGAAGTAGGTGATCATGAAACTGAAGTGGAAGAGAAGAATCCAGCTTCTTCACATAGGACTGTCACAGAGCCTAGAATCGTTGTGCAAACAACTAGTGAAGTTGATCTCTTAGATGATGGGTATAGATGGCGAAAATATGGGCAGAAAGAGCTATTACAAATGTACAACCCCGGGGCTTCAACAGATCCTAAAGCTACTAACAGCCACACCATTGCCAACAACAGTGCTTCACAGTTAAGATCACAAAATACAATACCTCCTGAGAGGCATGGTTTTGGAAGTAGCAGTGGTGTTGGTGGCAATGAGCAACAACCCGTTGCGCGTCTAAGGCTGAAGGAAGAGCAGATAACCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01230	1026	5314	-

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001230s00027566.1	PF03106.10	WRKY	144	187	3.10E-24
Glyur001230s00027566.1	PF03106.10	WRKY	259	276	5.00E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.791
SRR1783600	control	5.547
SRR1783602	moderate drought stress	6.522
SRR1811619	moderate drought stress	6.634

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.198
DRR006520	Root Summer glycyrrhizin high producing strain	6.188
DRR006521	Root Winter glycyrrhizin high producing strain	5.680
DRR006522	Root Winter glycyrrhizin high producing strain	5.540
DRR006523	Root Summer glycyrrhizin low producing strain	6.929
DRR006524	Root Summer glycyrrhizin low producing strain	7.086
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.893
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.722

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.617
SRR2868004	Drought Stress (root)	28.902
SRR2967015	Control (root)	31.690

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.560
SRR9715740	Leaf	23.591
SRR9715741	Leaf	20.032
SRR9715739	Root	1.742
SRR9715742	Root	6.460
SRR9715743	Root	5.532

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.202
SRR8749028	MeJA induced 9h	49.171
SRR8749029	MeJA induced 9h	25.789
SRR8749030	Uninduced	29.774
SRR8749031	Uninduced	35.422
SRR8749032	Uninduced	17.657

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.186
SRR8400027	Control - Root	13.042