Gene detail

Gene detail information of Glyur001229s00034266

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11210.1	7.00E-100	SGNH hydrolase-type esterase superfamily protein
NR	XP_003604688.1	2.49E-161	GDSL esterase/lipase CPRD49 [Medicago truncatula]
Swissprot	tr\|Q9SRM5\|CPR49_ARATH	5.00E-125	GDSL esterase/lipase CPRD49 (Precursor)
trEMBL	tr\|G7JP31\|G7JP31_MEDTR	9.00E-162	GDSL-like lipase/acylhydrolase {ECO:0000313\|EMBL:AES86885.1}

Sequence

Transcript Sequence

>Glyur001229s00034266.1
CTGCAAATGACACCGACGTTGACGATAGAAAGCAGAAAANGCAACAAAAGAAAAATTAATGTTGTCGAAGCTGACATTGACAAGAGAAGGCAAAAGAAGATGAAAAAGAAACAAAGACAAAATCCATGTATATAAATAATTTAGGATGCCATTGTTGTATGGTTTGTGGCGATGAGAGATGGTAGGACCAGTAAGGCCTCAATTTGTGCTGTTTGGTTCATCCATAGTTCAACTTAGTTACAGTGATGCAGGTTGGGGAGCTATTCTTACCAACTTGTATGCTCGCAAGGCAGATATAATTTTGCGAGGATACTCCGGTTGGAATTCAAGGCGTGCTCTGAAGGTTCTGGATGAAATATTTCCCAAGAATGCCCCTGTNCAACCATCATTAGTAATTGTGTACTTCGGAGGTAATGATTCTATTCATCCACATCCCTCAGGCCTTGGTCCTCATGTACCCNTCCAAGAATACATTGAAAACATGAGGAAGATTGCTATCCATCTTAAGAGCCTGTCAAAGAACATTCGCATAATATTTCTCAGTTCTCCTCCCGTCAATGAAGCACAACTTCAAGAAACATTCAGTAATGTGTTGGGGCCATTAAAGAGGACAAATGAATCCTGTAGAATCTATTCCGAAGCGTGTTTGGATCTGTGCCGTGAGATGAATGTCAAGGCCATTGATCTCTGGTCTGCACTTCAACAAAGGGATGACTGGTCAGATGTTTGCTTCACGGATGGAATTCATCTTTCATCTGAGGGGAACAAAGTAGTGGCAAAAGAGATATTGAAGGTCATTNGAGAAGCAGAATGGGAACCTAGTCTTCATTGGAAGTCAATGNCAATTGAGTATGCAGAAGATTCACCATATGATCCAATTGCTGTGGATGAAAAGTCTACTGTAAATGTCTCTACTTGGAACTTCCAAAAAAGTTTTGAATGGGACTAGAACTAGAGCTTTGTGCATTTTTCAAAACCATTGAAAATTAGGCCTTCAATTTGAAGAAATAATTTTGAAAAATGTATTTTGAAGTTATTGAAATTTTATTGATTTCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01229	7511	11842	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001229s00034266.1	PF00657.17	Lipase_GDSL	10	203	2.30E-27
Glyur001229s00034266.2	PF00657.17	Lipase_GDSL	10	124	4.00E-11
Glyur001229s00034266.3	PF00657.17	Lipase_GDSL	10	111	8.80E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.131
SRR1783600	control	14.431
SRR1783602	moderate drought stress	21.007
SRR1811619	moderate drought stress	20.233

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.467
DRR006520	Root Summer glycyrrhizin high producing strain	27.736
DRR006521	Root Winter glycyrrhizin high producing strain	27.102
DRR006522	Root Winter glycyrrhizin high producing strain	25.617
DRR006523	Root Summer glycyrrhizin low producing strain	35.839
DRR006524	Root Summer glycyrrhizin low producing strain	36.255
DRR006525	Leaf Summer glycyrrhizin high producing strain	81.589
DRR006526	Leaf Summer glycyrrhizin high producing strain	79.635

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.457
SRR2868004	Drought Stress (root)	24.114
SRR2967015	Control (root)	19.486

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.198
SRR9715740	Leaf	74.655
SRR9715741	Leaf	83.191
SRR9715739	Root	3.741
SRR9715742	Root	7.348
SRR9715743	Root	6.507

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.387
SRR8749028	MeJA induced 9h	9.128
SRR8749029	MeJA induced 9h	3.535
SRR8749030	Uninduced	10.357
SRR8749031	Uninduced	4.344
SRR8749032	Uninduced	7.157

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.378
SRR8400027	Control - Root	11.599