Gene detail information of Glyur001226s00038356 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40000.1 | 4.00E-136 | ortholog of sugar beet HS1 PRO-1 2 |
| NR | XP_004503236.1 | 0 | PREDICTED: nematode resistance protein-like HSPRO2-like [Cicer arietinum] |
| Swissprot | tr|O04203|HSPR2_ARATH | 5.00E-170 | Nematode resistance protein-like HSPRO2 |
| trEMBL | tr|G7JB65|G7JB65_MEDTR | 0 | Nematode resistance HSPRO2-like protein {ECO:0000313|EMBL:AES71117.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01226 | 68831 | 70216 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001226s00038356.1 | PF07231.7 | Hs1pro-1_N | 1 | 191 | 4.70E-87 |
| Glyur001226s00038356.1 | PF07014.7 | Hs1pro-1_C | 194 | 456 | 2.10E-131 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.984 |
| SRR1783600 | control | 4.020 |
| SRR1783602 | moderate drought stress | 5.388 |
| SRR1811619 | moderate drought stress | 5.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 229.898 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 226.262 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.046 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.969 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 348.338 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 344.496 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 163.778 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 168.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.432 |
| SRR2868004 | Drought Stress (root) | 139.636 |
| SRR2967015 | Control (root) | 592.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 527.643 |
| SRR9715740 | Leaf | 376.707 |
| SRR9715741 | Leaf | 846.514 |
| SRR9715739 | Root | 215.975 |
| SRR9715742 | Root | 533.074 |
| SRR9715743 | Root | 455.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 546.429 |
| SRR8749028 | MeJA induced 9h | 675.382 |
| SRR8749029 | MeJA induced 9h | 592.102 |
| SRR8749030 | Uninduced | 487.206 |
| SRR8749031 | Uninduced | 411.913 |
| SRR8749032 | Uninduced | 375.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.478 |
| SRR8400027 | Control - Root | 56.340 |