Gene detail

Gene detail information of Glyur001224s00023142

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39140.1	1.00E-130	pseudouridine synthase family protein
NR	XP_007143753.1	0	hypothetical protein PHAVU_007G098900g [Phaseolus vulgaris]
COG	YP_004670674.1	2.00E-60	RNA pseudouridine synthase [Simkania negevensis Z]
trEMBL	tr\|V7BD28\|V7BD28_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW15747.1}

Sequence

Transcript Sequence

>Glyur001224s00023142.1
CCCCCGCGAACAAAAACACCAGTGCGTGAGTGAGGGTGAGGGAGTAGCTAGCAGTAGCAGTAGCCACTCGCCCCCACAACACAAACACAACACAAGGAGGAATGGCCATGGGTTCGGCGATGAAGTTGAACGCACTCCCTATTCACTCTTATTTCTTCTTCTCCAAATCACACACCACTCTCACCTCCTCATTCCGTACTCTCCCTCGCCTCATTTGTTGTTCTTCTTCCCCTCCCTCCTCCAAATTCAACATCTCCTTCGCTCCCCCTAAGCCCGAGCCCAAGCCCAAGCCCGAGCCCGATGGCCCGATGCTGATCCCATGGATTGTTAGGGGAGAAGACGGCAACCTGAAGCTGCAAGCAGAACCTCCCCCGAGTTTTCTGAAGGCCATTGCCAACACCAAAAACGACAAGAAGAACCAAACTACGAAGAAGAAGAAGAAGAACGACAACAACATTAACAAGAAGGAGCATGATGAAAAGGAAACAAAGGCTACGGCGCCGCCCAAGTATTCGAAGGCGGCACGGAGGTTCTACAATGAGACTTTCAAGGACTCCGCCACGCGCCTCAGCAAGGTTCTCGCCGCCTCCGGAGTTGCGTCACGAAGAAGCTGTGAAGAGCTTATTTTCGAAGGCAAGGTTACCGTCAACGGNTCTGTCTGTAATACACCTCAGACTAGAGTGGATCCTACAAAGGATGTTATCTATGTCAATGGGAACCGCCTTCCTAGGAGGCAGCCTCAAAAAGTTTATCTTGCCTTGAACAAGCCAAAAGGGTACATATGCTCATCTGGGGAGAAGGAGTCTAAATCTGTGATAAGTCTATTTGATGATTATTTGGGGAGTTGGGGTAAANAGCATCCTGGAGTACCCACACCACGGCTATTTACTGTAGGGCGCCTTGATGTTGCCACTACTGGGTTAATTATTGTGACTAATGATGGAGATTTTGCTCAAAGACTTTCACATCCATCATTTAATTTATCAAAAGAATACATTGCAACAATTGATGGTTTAGTACATAAGAGGCACTTAATAGCCATAAGTGATGGAACGACCATTGAGGGCGTCCATTGTATACCTGATATTGTGGAGTTACTTCCGCGTGAGCCAGATATGCAAAGAGCCCGACTTCGCATTGTGGTTCATGAAGGGAGGAAGCATGAAGTTCGTGAACTTGTGAAAAGTGCTGGACTTGAGATTCATTCATTAAAGCGAGTACGCATTGGTGGTTTTAGACTTCCATCAGACCTTGGGATAGGGAAGTACATTGAGCTAAATCCAACAAATCTAAAAGCATTGGGGTGGAAGAGTTAANGTACGTTACTTCTTAATTGTTGGAGTCGTAAATATTCCTCATGCTTCTTCAGATTAGGACCGCTCTGGAGCTATAATCAAAGAATTGGCCAAAGCTTGTTTGATTTGAGTACCTGGTGNGTTACTTCGGAGAGTATCCGATTTAGGAGTGTTTGACATCAAANGCCAAACTGATGCGCTCAAAGTGAAGTGTTCCATTGTGAATGCTATTAAGACGTACAAAATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01224	61664	66196	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0001522 pseudouridine synthesis

GO:0009451 RNA modification

molecular_function

GO:0003723 RNA binding

GO:0009982 pseudouridine synthase activity

GO:0016866 intramolecular transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001224s00023142.1	PF01479.20	S4	154	200	1.00E-11
Glyur001224s00023142.1	PF00849.17	PseudoU_synth_2	217	359	4.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.851
SRR1783600	control	13.106
SRR1783602	moderate drought stress	11.693
SRR1811619	moderate drought stress	11.907

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.729
DRR006520	Root Summer glycyrrhizin high producing strain	19.941
DRR006521	Root Winter glycyrrhizin high producing strain	2.093
DRR006522	Root Winter glycyrrhizin high producing strain	2.163
DRR006523	Root Summer glycyrrhizin low producing strain	17.498
DRR006524	Root Summer glycyrrhizin low producing strain	18.023
DRR006525	Leaf Summer glycyrrhizin high producing strain	91.081
DRR006526	Leaf Summer glycyrrhizin high producing strain	89.482

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.240
SRR2868004	Drought Stress (root)	11.560
SRR2967015	Control (root)	14.253

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.622
SRR9715740	Leaf	67.761
SRR9715741	Leaf	44.473
SRR9715739	Root	9.938
SRR9715742	Root	9.922
SRR9715743	Root	13.285

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.603
SRR8749028	MeJA induced 9h	9.773
SRR8749029	MeJA induced 9h	7.293
SRR8749030	Uninduced	3.179
SRR8749031	Uninduced	1.109
SRR8749032	Uninduced	2.494

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.107
SRR8400027	Control - Root	17.955