Gene detail information of Glyur001223s00024755 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15930.1 | 8.00E-38 | Dynein light chain type 1 family protein |
| NR | XP_003546364.1 | 1.35E-73 | PREDICTED: dynein light chain 2, cytoplasmic-like [Glycine max] |
| Swissprot | tr|Q39580|DYL1_CHLRE | 3.00E-42 | Dynein 8 kDa light chain, flagellar outer arm |
| trEMBL | tr|I1MGN0|I1MGN0_SOYBN | 5.00E-74 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G16050.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01223 | 75298 | 78528 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001223s00024755.1 | PF01221.13 | Dynein_light | 33 | 118 | 2.30E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 88.574 |
| SRR1783600 | control | 89.620 |
| SRR1783602 | moderate drought stress | 73.204 |
| SRR1811619 | moderate drought stress | 73.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 84.534 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 83.170 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.440 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.425 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 67.591 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 68.804 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.625 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 86.273 |
| SRR2868004 | Drought Stress (root) | 72.296 |
| SRR2967015 | Control (root) | 76.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 49.929 |
| SRR9715740 | Leaf | 63.309 |
| SRR9715741 | Leaf | 46.557 |
| SRR9715739 | Root | 54.279 |
| SRR9715742 | Root | 55.257 |
| SRR9715743 | Root | 53.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 52.232 |
| SRR8749028 | MeJA induced 9h | 31.661 |
| SRR8749029 | MeJA induced 9h | 43.003 |
| SRR8749030 | Uninduced | 10.697 |
| SRR8749031 | Uninduced | 5.429 |
| SRR8749032 | Uninduced | 8.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 107.215 |
| SRR8400027 | Control - Root | 111.011 |