Gene detail information of Glyur001223s00024746 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16730.1 | 7.00E-142 | |
| NR | XP_004487828.1 | 0 | PREDICTED: condensin-2 complex subunit H2-like [Cicer arietinum] |
| Swissprot | tr|Q9LUR0|CNDH2_ARATH | 0 | Condensin-2 complex subunit H2 |
| trEMBL | tr|K7MBF8|K7MBF8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G16130.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01223 | 29927 | 34744 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001223s00024746.1 | PF06278.6 | DUF1032 | 56 | 134 | 5.60E-18 |
| Glyur001223s00024746.1 | PF06278.6 | DUF1032 | 336 | 544 | 4.60E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.917 |
| SRR1783600 | control | 2.983 |
| SRR1783602 | moderate drought stress | 3.061 |
| SRR1811619 | moderate drought stress | 3.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.181 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.155 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.287 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.262 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.349 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.400 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.788 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.269 |
| SRR2868004 | Drought Stress (root) | 5.525 |
| SRR2967015 | Control (root) | 6.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.171 |
| SRR9715740 | Leaf | 1.060 |
| SRR9715741 | Leaf | 1.646 |
| SRR9715739 | Root | 0.716 |
| SRR9715742 | Root | 2.273 |
| SRR9715743 | Root | 1.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.482 |
| SRR8749028 | MeJA induced 9h | 16.578 |
| SRR8749029 | MeJA induced 9h | 7.209 |
| SRR8749030 | Uninduced | 4.846 |
| SRR8749031 | Uninduced | 1.784 |
| SRR8749032 | Uninduced | 1.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.003 |
| SRR8400027 | Control - Root | 7.388 |