Gene detail

Gene detail information of Glyur001222s00036445

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G33390.1	0	RNA helicase family protein
NR	XP_006573438.1	0	PREDICTED: putative ATP-dependent RNA helicase PB1A10.06c-like isoform X1 [Glycine max]
COG	YP_003984590.1	1.00E-45	ATP-dependent helicase HrpA [Rothia dentocariosa ATCC 17931]
Swissprot	tr\|O22899\|DHX15_ARATH	7.00E-61	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|I1J7X3\|I1J7X3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G34350.1}

Sequence

Transcript Sequence

>Glyur001222s00036445.1
AATTTTTTTACCAGTTTTGATTAATTTTTTGCATCGTACTGACCCCCTCACGATTCAACCCTCTCCCCACTCAGTTCTCTTTCATTGNGCAACAGAAACAGAGAGACGCCAGACCCTCTTTTTCACTTAGTTCTCTCTCACTGACCAACAGAAACAGAGAGAACCCNGCACTTGCTGCCGTCTCTTCTCTACCAAAACGGCGTTGCTCGAAGGAGCAGTGGAGGAGCCAATCGAAGGCTTCCCTCTGGTGTTGGAGGAGCTCGGGAANGGGAAGGAGATAATACTTGGCCCCGGTGGTGAGGTTTTCGTGTAACAGGCGGCGGAAGAAACTTCCGGAAGAGGCGACGGCGGAGGCAGAGCTCGGCGGCGCCTAGGAAGGGGAGGGCGGCGCATCGGAGGATCTGTTCTCTGTTTCTGTTCTCTCAGCAAAACTTCACAAGCTGGAACCGTGTGTCTCTGTTTCTGTTTCTGTTCTGTGTTGAGAATCACAATTTCCCTGTTTCCCTAGCTTGAACGTCCTGTGGCACCGGCAGACAGCATAAAAAAAACAACCACAAACAGAGATACCCAAAACTCATCTTGCACAAAGCTTCCGGCTTGAAGAACCTTCGCTGGTTTCTGAGCACATAAAAAATGGAAACATGGGAAAGTTTAGGAAGCCATATTGAGTTCAGTTCTCAAAGTTTGGGAGATAGTGACAGTAACGCACTGATTTTGCCAGCTAAGGGGATGAAGAAAAGGAAAGGGATGGAACAGGAACGTGGCAAAGTACAATCAAATAAGAAACAGAAGTTGAGCAAGGCTCAGAAAAAGAAGCTGAAGAAGTTAGAGGATGACAAGGGGAAGCAACTTCTACTGGAAAAAGCCATCAAGACATTAAATGAGAACACGCTTCCAGAGTATGCATATCCTCTTTTGCAGTCTTCGTGCAACATCAATCGGGATGAGACTGTGAAGGAAAAGCGTAGGAGGGCTGTACATTTATTAAAAGAAGGATTGGAGGTTCCACATGGTGATCAGCTGTCCAAGAAACAGGATTATCCCTGTAGAACTGAACCTGAGAAAGAAGAGATTCATTTGGCTCAANTTCAGGAACTTGAGGAAGATGACATCATTCAACCGATTAGAACAGAAAGAGAAGTCTTAAATACAACATCTGTTCCTTTGGAGTCCTCTCAAGAACCAGTTCATGGAAATGAAATTGTAAATTATAAATCTGTTGCTAAACCTCTTGCTGACATTTCCCTTGAAAAGCAACCTGATGAAATCATAAGTTCTTCTCCCACATCTTGTTCTATTGATGAGATAAAAAGCACCGCTTCAAAGGACGGGAAAGATGAGAACTGCATCACCAATTTCAATGAATTGAGCAACATTCCCAATGTTTCTNCACGGAGGCCTTTGACTGCTCCTACTATTGTGCATGTATACAGACCACCCGAGGTGGAAGAAAAAAGAAAGGATCTGCCTATAGTCATGATGGAGCAAGAAATAATGGAAGCTATAAATGACCATTCCAATGTTATCATATGCGGAGAAACTGGATGTGGTAAAACAACTCAGGTTCCACAGTTCCTTTATGAAGCTGGCTATGGTTCAAGTAAGTCCTATGCTCACAATGGTATTATTGGTGTTACTCAACCACGCCGGGTGGCGGTTCTTGCCACAGCAAAGCGTGTGGCATATGAGCTTGGCCTCCATCTAGGGAAGGAGGTTGGCTTTCAAGTTAGATATGACAAGAAAATTGGAGAAAATTGTTCTATCAAGTTTATGACTGATGGCATTTTGCTACGAGAAGTACAGAATGATATTTTATTGAGGCGTTATTCTGTCATAATTCTTGATGAGGCTCATGAGAGGAGCTTGAACACAGACATTCTGATCGGGATGCTCTCGCGTGTAATTAAAACTCGCCAAATGATTTATGATGAACAACAGAAGATGATCCTTTCAGGGGAAAGTATAAGTCCTGAANAAAGGGTTTTTCCATTAAAACTTGTGCTGATGAGTGCCACCTTGCGAGTGCAAGACTTCACTTCTGGAAGGTTATTCCATACTCCTCCACCGGTGATAGAAGTTCCCACGAGGCAATATCCAGTTACAGTGTATTTCTCAAAGAAAACCGAGAAAATAGATTATATTGGTGCAGCATACAAGAAGGTCGTGGCAATTCACAAGAGATTGCCACCTGGGGGCATACTTGTCTTTGTCACTGGACAAAGGGAAGTAGAGGACTTGTGCAGGAAGCTACGCAAAGCTTCAAGGGAGTTTATCATGAAAAAAGTTAAAGGGTCTGTGGAAAGGGATGACACTGTGGTCCATGAAACAAATTCTGTTGAGGGAGTAAATATTAATGAGATTAATGAAGCATTTGAGATTTCTGGAAGTTCAGCCATCCAGCAAACTGATAGGTTTAGTGGTTATGATGAAGATGATGACAATNATGTAGATGGGAATGAATCTGATTCTTATGATTCAGAAGCCGAGAGTGAACTGGAATTTAANGATGATGATGATAATCTTGAGGATTCAGAGAACAAGAGTAATATTGTGGATGTCTTAGGGCAGGAAGGAAGTCTTGCTTCACTGAAGGCTGCTTTTGAAAAATTGTCTGGGCAAGCTCCATTAAGCTCCTCGAATGGCTCGAATGGGGAGCAGATATTTTCTGTGAATACAGAAGATGGTTTAGACCAATCAAAAGTTTGCAGGGAGAAAAGAGCTAGAGAAAATTGCAGTCCTTCTCCAGGTGCGCTCTTTGTTCTACCGCTTTATGCTATGCTGCCTGCTGCAGCTCAACTTCGTGTATTTGAAGGAGTCAAGGAGGGAGAGCGGCTTGTTGTTGTTGCTACAAATGTTGCNGAAACATCTTTAACAATCCCAGGGATAAAGTATGTGGTTGATACTGGAAGGGAAAAGGTGAAGAATTATGACTCCTCTAATGGCATGGAGACGTACGAAGTGCAATGGATAAGTAAGGCATCCGCTGCTCAACGTGCGGGGAGAGCTGGAAGAACTGGAGCTGGACACTGTTATCGTCTCTATTCTTCTGCTGCCTTTAATAANGAGTTTCCTGAGTACTCTCCTGCTGAAGTCGAGAAAGTACCTGTTCATGGTGTTGTCCTTCTCTTGAAATCCATGCATATTAAGAAGGTCGCAAACTTTCCATTTCCTACTTCTCTCAAGGCTGCTTCCCTGCTTGAAGCTGAGAATTGCTTGAAAACTCTNGAAGCACTTGATAGCAAGGATGAACTTACAATTTTGGGAAAAGCCATGGCACTTTATCCCTTGAGTCCTCGTCATTCGAGAATGATCCTCACGGTTATTAAAAATACAAGGCACGAGCATCAATGTAATTCAGGCTTGCTTTTGGCATATGCTGTTGCAGCTGCTGCAGCATTGAGTTTGTCAAATCCTTTCATAATGCAATATGAAGGAGATGATAGCAGCAGAGATTCAGAAATGTCTGAGAAATCTGGCATGGAAGACAGTGAGAAGGACATTGATAAAAAAATGAAGACGGGGAGAAAGAAATTAAAACAAACTGCTAAAGTTGCACGCGAAAAATTTCGAGTTGTCACTAGTGATGCCNTAACCATAGCATATGCCTTGCAGTGTTTTGAACGTTCTCAGAAGAAGGTAGAATTCTGTGATGACAATGCATTACATTTCAAGACCATGGAGGAAATGTCCAAACTTAGACAACAACTACTTAAACTGGTCTTTTATCAGAGTGATAAAGGTGGTTTTGAAGAAGAGTACTCATGGATTCATGGAACTCTAGAGGATGTTGAACTTTCTTGGCAGGTTTCTTCTGCACAATATCCTCTTTCTCTGGTTGAGGAAAGGCTCATTTGTCAAGCAATATGTGCTGGCTGGGCAGATAGGGTTGCTAAACGTATTACACCTTCTAGGGCTGCCGATGGAGAGAAAAGTTCTCGTGCCATTAGGTATCAATCATGCACGGTGGAAGAAAGTATTCTCCTTCATCGTTGGTCATCAGTTTCTACTGTAGGCCCTGAGTTTTTGGTTTACAATGAATTATTAGAGACAAAAAGACCAAACAAAGAAGGGGTAACCAGCGCGAAGAGAGCATATATGCATGGAGTAACNAGTGTGGAGCCAGCTTGGCTAGTTGAGCATGCCAAGTCTTCATGCATCTTCTCTCCACCCTTGACAGATCCCAGACCTTTCTATGATGCGCAGACTGACCAAGTAAAACATTGGATCGTCCCAACCTTTGGGCGCTTCTGTTGGGAGCTTCCGAAGCATTCATTGCCCATTAGCAATGATGAGCATCGGGTGCAAGTGTTTGCCTATGCTTTACTTGAAGGCCAGGTGTGTCCATGTTTAAAATCTGTTCGAAAANACATGTCAGCCCCTCCTGAAAGTATTTTGAAGAGAGAAGCATTTGGTCAAAAAAGGGTGGGAAATCTTTTAAGCAAGTTGAAGAGCAGGCTAATTGATAGCTCTGCTATGTTAAGAATGGTGTGGAAGGATAATCCAAGAGAATTATTTTCAGAAATTTTGGATTGGTTTCAGCAGAGTTTTCACAAGCACTTTGAAGAGTTATGGTTACAAATGCTTAATGAAGTGCTTTTGGAGACACAAGATCACCGTNTGTGTAAAAGTTTTAAGAGAAAGTTGAAAGGAAAATCTAAAACGCNGCAATGATTGGTTAAT

Protein Sequence

>Glyur001222s00036445.1
METWESLGSHIEFSSQSLGDSDSNALILPAKGMKKRKGMEQERGKVQSNKKQKLSKAQKKKLKKLEDDKGKQLLLEKAIKTLNENTLPEYAYPLLQSSCNINRDETVKEKRRRAVHLLKEGLEVPHGDQLSKKQDYPCRTEPEKEEIHLAQXQELEEDDIIQPIRTEREVLNTTSVPLESSQEPVHGNEIVNYKSVAKPLADISLEKQPDEIISSSPTSCSIDEIKSTASKDGKDENCITNFNELSNIPNVSXRRPLTAPTIVHVYRPPEVEEKRKDLPIVMMEQEIMEAINDHSNVIICGETGCGKTTQVPQFLYEAGYGSSKSYAHNGIIGVTQPRRVAVLATAKRVAYELGLHLGKEVGFQVRYDKKIGENCSIKFMTDGILLREVQNDILLRRYSVIILDEAHERSLNTDILIGMLSRVIKTRQMIYDEQQKMILSGESISPEXRVFPLKLVLMSATLRVQDFTSGRLFHTPPPVIEVPTRQYPVTVYFSKKTEKIDYIGAAYKKVVAIHKRLPPGGILVFVTGQREVEDLCRKLRKASREFIMKKVKGSVERDDTVVHETNSVEGVNINEINEAFEISGSSAIQQTDRFSGYDEDDDNXVDGNESDSYDSEAESELEFXDDDDNLEDSENKSNIVDVLGQEGSLASLKAAFEKLSGQAPLSSSNGSNGEQIFSVNTEDGLDQSKVCREKRARENCSPSPGALFVLPLYAMLPAAAQLRVFEGVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDSSNGMETYEVQWISKASAAQRAGRAGRTGAGHCYRLYSSAAFNXEFPEYSPAEVEKVPVHGVVLLLKSMHIKKVANFPFPTSLKAASLLEAENCLKTLEALDSKDELTILGKAMALYPLSPRHSRMILTVIKNTRHEHQCNSGLLLAYAVAAAAALSLSNPFIMQYEGDDSSRDSEMSEKSGMEDSEKDIDKKMKTGRKKLKQTAKVAREKFRVVTSDAXTIAYALQCFERSQKKVEFCDDNALHFKTMEEMSKLRQQLLKLVFYQSDKGGFEEEYSWIHGTLEDVELSWQVSSAQYPLSLVEERLICQAICAGWADRVAKRITPSRAADGEKSSRAIRYQSCTVEESILLHRWSSVSTVGPEFLVYNELLETKRPNKEGVTSAKRAYMHGVTSVEPAWLVEHAKSSCIFSPPLTDPRPFYDAQTDQVKHWIVPTFGRFCWELPKHSLPISNDEHRVQVFAYALLEGQVCPCLKSVRKXMSAPPESILKREAFGQKRVGNLLSKLKSRLIDSSAMLRMVWKDNPRELFSEILDWFQQSFHKHFEELWLQMLNEVLLETQDHRXCKSFKRKLKGKSKTXQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01222	46005	52819	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0004386 helicase activity

GO:0005524 ATP binding

GO:0008026 ATP-dependent helicase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001222s00036445.1	PF00270.24	DEAD	285	466	3.00E-07
Glyur001222s00036445.1	PF00271.26	Helicase_C	709	795	8.20E-13
Glyur001222s00036445.1	PF04408.18	HA2	856	986	8.00E-15
Glyur001222s00036445.1	PF07717.11	OB_NTP_bind	1068	1171	1.90E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.262
SRR1783600	control	7.188
SRR1783602	moderate drought stress	9.190
SRR1811619	moderate drought stress	9.130

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.218
DRR006520	Root Summer glycyrrhizin high producing strain	8.983
DRR006521	Root Winter glycyrrhizin high producing strain	9.644
DRR006522	Root Winter glycyrrhizin high producing strain	9.211
DRR006523	Root Summer glycyrrhizin low producing strain	13.291
DRR006524	Root Summer glycyrrhizin low producing strain	13.317
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.419
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.491

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.763
SRR2868004	Drought Stress (root)	11.887
SRR2967015	Control (root)	15.012

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.645
SRR9715740	Leaf	7.324
SRR9715741	Leaf	6.642
SRR9715739	Root	1.003
SRR9715742	Root	12.569
SRR9715743	Root	10.654

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.218
SRR8749028	MeJA induced 9h	12.786
SRR8749029	MeJA induced 9h	5.802
SRR8749030	Uninduced	4.201
SRR8749031	Uninduced	3.733
SRR8749032	Uninduced	3.967

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.101
SRR8400027	Control - Root	11.653