Gene detail information of Glyur001221s00033776 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39050.1 | 9.00E-37 | hydroxyproline-rich glycoprotein family protein |
| NR | NP_001276293.1 | 5.32E-62 | uncharacterized protein LOC100783843 [Glycine max] |
| trEMBL | tr|C6TJC4|C6TJC4_SOYBN | 2.00E-62 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU23014.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01221 | 60615 | 63735 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.193 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.180 |
| SRR1811619 | moderate drought stress | 0.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.028 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.014 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.033 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.836 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.210 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.180 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.570 |
| SRR2868004 | Drought Stress (root) | 0.579 |
| SRR2967015 | Control (root) | 0.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.098 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.082 |
| SRR9715739 | Root | 0.181 |
| SRR9715742 | Root | 0.050 |
| SRR9715743 | Root | 0.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.651 |
| SRR8749028 | MeJA induced 9h | 5.030 |
| SRR8749029 | MeJA induced 9h | 3.268 |
| SRR8749030 | Uninduced | 0.704 |
| SRR8749031 | Uninduced | 0.291 |
| SRR8749032 | Uninduced | 0.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.795 |
| SRR8400027 | Control - Root | 0.287 |