Gene detail information of Glyur001221s00033775 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | KHN40157.1 | 1.12E-10 | hypothetical protein glysoja_028778, partial [Glycine soja] |
| trEMBL | tr|K7KNZ9|K7KNZ9_SOYBN | 2.00E-10 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G14425.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01221 | 56511 | 59024 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001221s00033775.1 | PF13456.1 | RVT_3 | 76 | 120 | 2.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.823 |
| SRR1783600 | control | 19.687 |
| SRR1783602 | moderate drought stress | 17.008 |
| SRR1811619 | moderate drought stress | 16.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.476 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.752 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.439 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.749 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.843 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.331 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.921 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.057 |
| SRR2868004 | Drought Stress (root) | 0.081 |
| SRR2967015 | Control (root) | 0.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.198 |
| SRR8749028 | MeJA induced 9h | 0.010 |
| SRR8749029 | MeJA induced 9h | 0.051 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.013 |
| SRR8749032 | Uninduced | 0.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.056 |
| SRR8400027 | Control - Root | 0.066 |