Gene detail

Gene detail information of Glyur001221s00033771

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08570.1	1.00E-90	atypical CYS HIS rich thioredoxin 4
NR	XP_004493141.1	1.74E-156	PREDICTED: thioredoxin-like 1-1, chloroplastic-like [Cicer arietinum]
COG	YP_003317653.1	1.00E-09	thioredoxin domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589]
Swissprot	tr\|O64654\|TRL11_ARATH	2.00E-112	Thioredoxin-like 1-1, chloroplastic (Precursor)
trEMBL	tr\|A2Q5R3\|A2Q5R3_MEDTR	3.00E-147	Uncharacterized protein {ECO:0000313\|EMBL:AFK35174.1}

Sequence

Transcript Sequence

>Glyur001221s00033771.1
CCCTTTTTGGGACTACCTTTTTTCTGCACTTTGTGCTTCCTTTCGTTGTTGTTTTGGAAGAGGCGTTCTTCTTTTTCTTTTTCTTCTTCTTCTTCTTCTTATTGCATTTTTTTTTCAAGAAAATCCGAAGGAAGTTAAGCTGAATAATAGAAGAGAGGTTTTAATTTATTGTGTGTTCTGAATCAACATTGGTATCCAATGGCTGAAGTTTTAATCAAGACAGTTTGGTTTCGTCTTGGCATGGAAACAGACAACAACATCATCGAAGGGTATCGATGGTTCCTAAGACTTGTAGCTTCAACTCTGGCCTCAGAAGCTTCCCTTCTCTGAAGCTAAAGTCTCAGTTTCTCAGATCTTCCTCCTTTTCTGATTTTCATGCCAAAAAGCCTATCTTTCGTGTGAATAGAGCAATGCCCAACAGGGTCAATTCACAAATTGCATCTTCAACTGAGGTTAAGACGACCCTAAGAATAGGGAAAGTTCAGAAATGGTGGGAAAAGGGGGTTCAACCTAACATGAGAGAGGTGACTTCAGCACAAGACCTTGTGGACTCACTGTTAAGCGCAGGGGACAAGCTTGTGGTTGTTGATTTCTTCTCTCCTGGTTGTGGTGGCTGCAAAGCCCTTCATCCTAAGATATGTCAATTGGCAGAGATGAATCCTGATGTTCAGTTCCTTCAGGTGAACTANGAGGAGCATAAATCCATGTGTTATAGTCTTAATGTCCATGTCCTTCCTTTCTTCCGCTTCTATAGAGGTGCTCATGGTCGCTTATGCAGCTTTAGCTGCACCAATGCCACGATCAAGAAGTTCAGAGATGCATTGGCCAAACACACTCCAGATAGATGCAGCTTGGGCCCAACCAAAGGGTTAGAGGAGAAAGAGCTCCTAGCTCTCTCTGCCAACAAAGATCTTTCCTTCACATACNCGCCAAAGCCCCCTCAGCCTGCGCATGCATCCCCGGCAAGTGAAGAGTTCGCAACCGAAGCTTCTCCTGCTCCTACTAGGCCAGAGTCCCTTCCTTTACCTTCATTGACCTCACAGTCTGAAGAAGTATCCAAGGAGAGAACACTGACCACTGCTGGGAGATGATGTGTGGTTAGCTTTTAAAGCAACCCCATCTTCTTGACTGCATCCCTTGTACAGTTTAGGTTTGGAGTTAATATCTTGTGAAGTAGTAGTATACTTGTGAGTGAAAATATCATTGAAGATCAAGTCACGTAGTGTGTATTCCACCAAGGCAATTGGATTTATGTTTTTTTGGATCCATGCCTTGATAATATTTAGGTGAAAATCTNAAGCTGTAAAATTATTAGCTTGCACTTCTTTTTTGTGTGTTTGAGGAATATCACTCCCTAATGTTGTAAAATGAATGTCTTTTTGTTATTCATCAACTATGGATAATATAGCTTCTGTTCTATTTCTGAGCCTATAAGGAAATGGAATGGGCTATTTCTGTTCTCATGCTTGGTTGGTTATTGGGGAATGGTCATTTTAGGAATGAGTATNAACTCGTATATTGTATGAATAGATTTTTTTACTATCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01221	6637	10435	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001221s00033771.1	PF00085.15	Thioredoxin	92	162	2.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.197
SRR1783600	control	22.514
SRR1783602	moderate drought stress	38.983
SRR1811619	moderate drought stress	38.514

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.932
DRR006520	Root Summer glycyrrhizin high producing strain	25.974
DRR006521	Root Winter glycyrrhizin high producing strain	254.065
DRR006522	Root Winter glycyrrhizin high producing strain	246.580
DRR006523	Root Summer glycyrrhizin low producing strain	18.500
DRR006524	Root Summer glycyrrhizin low producing strain	18.643
DRR006525	Leaf Summer glycyrrhizin high producing strain	57.389
DRR006526	Leaf Summer glycyrrhizin high producing strain	57.909

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.260
SRR2868004	Drought Stress (root)	62.906
SRR2967015	Control (root)	77.020

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	57.250
SRR9715740	Leaf	80.622
SRR9715741	Leaf	68.052
SRR9715739	Root	27.630
SRR9715742	Root	17.937
SRR9715743	Root	17.670

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.438
SRR8749028	MeJA induced 9h	65.201
SRR8749029	MeJA induced 9h	35.375
SRR8749030	Uninduced	36.085
SRR8749031	Uninduced	84.841
SRR8749032	Uninduced	41.854

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	51.540
SRR8400027	Control - Root	33.835