Gene detail information of Glyur001220s00034105 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70170.1 | 7.00E-49 | matrix metalloproteinase |
| NR | XP_003613392.1 | 3.13E-148 | Matrix metalloprotease [Medicago truncatula] |
| COG | YP_006179981.1 | 7.00E-30 | M10 family peptidase [Halobacillus halophilus DSM 2266] |
| Swissprot | tr|P29136|MEP1_SOYBN | 1.00E-53 | Metalloendoproteinase 1 (Precursor) |
| trEMBL | tr|G7K5I7|G7K5I7_MEDTR | 1.00E-148 | Matrix metalloproteinase {ECO:0000313|EMBL:AES96350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01220 | 37979 | 38929 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001220s00034105.1 | PF01471.13 | PG_binding_1 | 75 | 131 | 4.90E-11 |
| Glyur001220s00034105.1 | PF00413.19 | Peptidase_M10 | 167 | 314 | 1.30E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.435 |
| SRR1783600 | control | 0.389 |
| SRR1783602 | moderate drought stress | 0.266 |
| SRR1811619 | moderate drought stress | 0.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.232 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.116 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.196 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.321 |
| SRR2868004 | Drought Stress (root) | 42.254 |
| SRR2967015 | Control (root) | 37.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.120 |
| SRR9715740 | Leaf | 1.022 |
| SRR9715741 | Leaf | 3.642 |
| SRR9715739 | Root | 0.678 |
| SRR9715742 | Root | 2.864 |
| SRR9715743 | Root | 2.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.827 |
| SRR8749028 | MeJA induced 9h | 62.926 |
| SRR8749029 | MeJA induced 9h | 27.136 |
| SRR8749030 | Uninduced | 87.267 |
| SRR8749031 | Uninduced | 286.826 |
| SRR8749032 | Uninduced | 122.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.868 |
| SRR8400027 | Control - Root | 8.441 |