Gene detail

Gene detail information of Glyur001218s00032879

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53560.1	1.00E-57	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004495267.1	7.15E-126	PREDICTED: anaphase-promoting complex subunit 7-like [Cicer arietinum]
COG	NP_681985.1	5.00E-15	hypothetical protein tll1195 [Thermosynechococcus elongatus BP-1]
Swissprot	tr\|Q9LS48\|SG1_ARATH	7.00E-33	protein SLOW GREEN 1, chloroplastic {ECO:0000303\|PubMed:24420572} (Precursor)
trEMBL	tr\|A0A072U4F2\|A0A072U4F2_MEDTR	2.00E-117	TPR superfamily protein {ECO:0000313\|EMBL:KEH24003.1}

Sequence

Transcript Sequence

>Glyur001218s00032879.1
ATGTCTTCTTCTTCTTCTTCAACCTTAGCCATGGAGTCTCTCCCTAAAGTGCACCACTCTCTACTCTCTTTCAATCACCGCTCAATAATACCCTTCACCACCACCGTCTCCTTCCGTTCACCACAACCTCGTCCATTCTCTTCTTCACCCTTCATATCATCATCATCTATCAAGTCCTCGCCCTCACCATCGCCGTCGCCGTCACCGTTACCCAAAAACGANAACGTTTTTCACAAACCCCAAATCGCTTCACCCCAAACCCTAAACCCNCTTTTCTCACCTCTCTCCAAACCCACCTGCATCGCCATAGCCGCAACCGCATTCTTCTTCATGCGCCTTCATCTCAACCCCGCCGCGGCCGCCACACCCTCGCCNGTTCCGCCACCGCCGGCGGCGGCCTCCGAGTCCTCCACCGCCGAATCGGAAAATCCCTCACAGAGCCCCATCGAAGAGCAAATTCGCAACAATCCCGGTGACGTCACCGCCGCCGCTCTCCGTTCCCTCGTGGAGTCTAACGTCAGAGACCGCAAAATCGGCGAAGCGATTCGTGTTGTGGACCAATTGATCGAGCTCGAACCGGAGGAACTTGAGTGGCCGCTTCTGAAGGCACATTTGTACAGTTACAACGGCGAGCACGAATTGGCGAAGAACGGATTTGAAGATGTGCTAAAGAAGGATCCGTTTCGAACCGAAGCTTATCGCGGCCTTTTAATGGCAACTTCGGAACTGAACGAGCCAACTGAGGGATTGCTGAAGAGAATTGAAGGAGCGGTAAATTTTTGCAAGGAGCAAAAGAGGGACTCAGAGGCGAGGGAATTCAAGCTTTTGATTGCGCAGGTGAAGGTTATGGAAGAGGATTATTCCGGTGCGCTGAGNGTGTATCAGGAGCTTGTGAAGGAAGAACCGAGAGATTTTAGACCTTACTTGTGTCAGGGTGTTGTGTATACTCTGCTTAGGAAGAAAGATGAAGCAGAGAAACAGTTCGAGAAGTACCGGAGACTTGTACCTGAGAATCACCCTTATAGAGAGTATTTTGAGGACAACACTAAGATTTTCTCGCAGAAGCTAGAAAAAGGAGGAATTGGTGCAAAGAGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01218	78164	79261	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001218s00032879.1	PF13181.1	TPR_8	201	229	0.071
Glyur001218s00032879.1	PF07719.12	TPR_2	308	338	0.05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.960
SRR1783600	control	14.937
SRR1783602	moderate drought stress	12.504
SRR1811619	moderate drought stress	11.857

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.310
DRR006520	Root Summer glycyrrhizin high producing strain	15.480
DRR006521	Root Winter glycyrrhizin high producing strain	4.083
DRR006522	Root Winter glycyrrhizin high producing strain	4.224
DRR006523	Root Summer glycyrrhizin low producing strain	13.740
DRR006524	Root Summer glycyrrhizin low producing strain	14.283
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.088
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.271

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.993
SRR2868004	Drought Stress (root)	5.826
SRR2967015	Control (root)	5.369

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.906
SRR9715740	Leaf	9.370
SRR9715741	Leaf	5.179
SRR9715739	Root	10.125
SRR9715742	Root	16.622
SRR9715743	Root	15.206

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.706
SRR8749028	MeJA induced 9h	18.201
SRR8749029	MeJA induced 9h	14.346
SRR8749030	Uninduced	3.686
SRR8749031	Uninduced	1.167
SRR8749032	Uninduced	3.895

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.750
SRR8400027	Control - Root	9.311