Gene detail

Gene detail information of Glyur001218s00032877

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53540.1	2.00E-114
NR	XP_004494988.1	0	PREDICTED: uncharacterized protein LOC101494666 [Cicer arietinum]
trEMBL	tr\|A0A072VLQ7\|A0A072VLQ7_MEDTR	0	DUF4378 domain protein {ECO:0000313\|EMBL:KEH42338.1}

Sequence

Transcript Sequence

>Glyur001218s00032877.1
GTGTGTTTTTCCTCCTGTGTCAGCATTTCTATAATTTTGAAAGTTCAAATAGATACCCCACTCACTCTCACTCTCTCTCTCTCTCTCTCTCTCACCCACTTCCTCATCTCGACGCTAATAACGGCCCTCCATTAATACCACCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTTCTCTCCCTCTATCCTATTCCTTCACCCCACTACTACCTGACCTCTCTATCACAACGCACACTTTCTGTGTGTAGCTAAAATCAATCACGTTCTTCTCTTTTCACTGTTGTGTTGTGTGTCTCCTTGCGCCTGTCACGCCTTTTTCTCTTTCTTTTTTATAAATTTTGAAATTAGCTTGAGAGGATCCTAGGGCTTTGTCGCCTTCGTCATCTTCCCCGAACCTTCACCCAGATTCTCGATCTGCATTTTCATGAACCGTCATGGACAAATCTCACCACTGCAAGCCCAACCTCGCTCTTCCTCCTCAAGGGAACAAGCAGATTCATAGGCAGCGACAACTTCCGGATTCGTCTCCTGATTCTGGTTCTGGCAGTGGTGGGGTTGAAGACANAGATTCGTTCTCATTTAAATTTGGGTGGAGATCTTCTAAACAATCGCCTGGAACCCCAATTAAGAAGTTACTAGCTGAAGAGATGTCACCAAAAGCTGCTGAATCCAAGAGAAGATCCCCAGGTGTTATAGCCCGATTGATGGGTCTTGATGGGCTTCCATATCAGCAGCCAGCTAATAAGCAGCACAAGGATCTACAGAAGACAACACAATTAGAGAAACCTCGGAGCAGAGGAACGACAAGTGATGGCCGATCTTCTAGGAGAAGCTCAAGGGATCAGCAAGAATTTAAGGATGTATTTGAGGTCTCAGAGATCCCAAAGGTAGAGAGTAGTAGGTATTCACCGAATGGGTGTGCGGACTTGAAGATCACTGATACTGAAATGTCATTTATTGAACAGAAGTTCATGGATGCCAAACGCCTTGCAACTTNTCAGGATATGCAGTCTTCAAAGGACTTCCATGATACACTTGAGGTTTTGGACTCTAACAAGGATCTTCTGCTAAAATATTTTAAGCGGCCAGATTCTTTGTTTAAAAAGCATTTGAATGATCTGCAAGCTGACCCTCTCCAATCCCATATGGGTCATGTTGAAGCTACGAACATTGAGATATATGAACATGACTTCAATTGGAGGTCAGATAGGGAGACAACACGGGTGAATTACAATAAATTTCATCAGAAGCATCATGATGGGTACCCTTGCCAATTTGACAAAAGACATGTGATGCATAGTTCACCAAAATCATCAAAGCTTCAGTTTAAGAGTGGCCATGAACAAGATGCAGGCCCCACAAAGATTGTTGTCCTCAAACCTAATCTCGGGAAAGTGCAGAGTGGTACCAGAATTGTGTCACCACCTTGTTCTTCACATAACTTTCTGTCAGATAATGGAAATCACAACGAATTTCCAGATGTCAGATTTAGAGACAGAGAACTGTATCAAATGATAAATTTGCCTGACAGTGCCAGATCTTTTAGGCACAATTCGTTGGAGTCTAGAGAAATTGCAAAGGAAATCACTAGGCAAATGAAAAATAGTCTGAGCAATGGTCGCAAGATGTTTTCCTCTTCTGGATTTAGAGGATACACTGGGGATGATAGTTCGTGTAGTGTTTCTGGGAATGAATCTCCAGAGGAATCAGAGGAACCTACAGCAACTTTGGGAAACTCNTTTGACTTAAACAACCGTAGCAGGCGGTCATCCCATTCTAGTGAATCATCTGTGAGTAGGGAGGCAAAGAAGAGATTATCAGAGAGGTGGAAAATAGCACACAAGTCTCAAGAGTTGCAAGTCAGTAGGAGCAGCACGTTGGGTGAAATGCTAGCTGTCCCTGATAAGGAAATGAAGGGCACAAATTTTGACAGCATGACTAGTGGGGAAGGTTCCCGCGATAAGTTTGCTCACAATGGTAAACCTGCTGGGTGGGTTGAACCACTGGGTATCAGCAGCAAGGATGGTTGGAAGGATGGGTGTATTGGAAGTTTGTCAAGGTCAAAATCTCTTCCTACTTCATCTACTGCCTTTGGAAGTCCTAAAACATTCTTGCGCACCGAAGCACTCTTTGATGATCGATTTATGGTGCCAAAGGAAGCCCTTAAACGGGAGAAGAGAAGAGCCGCAAAGAGTCATGGTCATAGACGTGGCGTGAATACTAGAAGCACAAAATCTGGTCACAAGAAGTCTTTGTCCATGCACTCATTGAAGCATGGAAGTAATGAGTTTTCTCCGGACTTGACTACAATTCAGAATAAAATAAAGATCAACCTTGAAGAAGATTCACCCAAGCTAGAGGTTCTGGTCACTGAATCCTTTGCTGAGCTCAGAGATACAAGTGCTGTTTCTGATGATGTTGTGTATGTGGCAAATGAAGCAAATGAAAACNCAGTTGAATTACCTGAACCTTCGGATAAGGTGCTTCCTGAATTATCCTCTCATGTCTTGATAAAAGGCGACTGTGGTATTGTTGACAAAGACACTTCAATGCAGCAGGACCGATCAGCTGGGTCTTCTGGTGGAAGTTCAGTCTGCTCTGAACCACCTGTGCCTGGACTTGAATCTTCATGCTGTAAAGATGCTGATCAACCCAGTCCAATCTCAGTCCTAGAAGCTTCTTTTACAGATGATCTGTCCTCTTGTTCTGAATGTTTTGAAAGTCTCAGTGCTGACCTACAAGGACTGCGAATGCAACTTCAGATGCTGAAGTTGGAATCTGAAGAATATGTAGAGGGACCCATGCTAATTTCAAGTGATGAAGATGGTGCTGAAGCATCTACTGGAATGGCAGAAAACAATAATAGATTATGTAGAACTGAAGATAGCTGGGAGTCTTCATACATCATTGATGTCTTGTCTGAATCTGGTATTGATGGTACTAATTTGGAAATTTGGCATTCTCTAGAATGCCCTGTGAGTCTTTCAGTCTTTGATGAACTTGAAAAGAGGTACTGTGATTTGACTTCTTGTTCAAGGTCTGAAAGGAGATTGCTTTTTGACCGTATAAATCTGGGAATTGTCAAACTCCACGAGCAATCCATGCATGCACAACCATGGGTGGGCCCTGCAACCATAAATTTTGGTTCCAAGTTGATTAACAATAATGGGGTCCAAGATGGTCTTTTTAGGATGCTAAGGAGCCAAGGAAAAGTGAAGGATGATGCTCTGGGGAAGGTGCTGGTTAGGGAGTTGCAGTGGTTGGATTTGAGAAATGACATTGATGTAATAGGCAGAGAAGTTGAGAGATTGTTATTAGATGATTTAGTGGCAGAAATAGTTGGTGCTTAAGAAATTTTGTACCTGAGAGGAGAGAGCATATTTGTTCTTTAGGATGTTTACTTGCCATGTAAATCAAGTAGGACAATGTTAACTTCATCAGAAGATGAATAAAGGGATCATAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01218	52234	58327	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001218s00032877.1	PF14383.1	VARLMGL	81	98	3.30E-06
Glyur001218s00032877.1	PF12552.3	DUF3741	175	220	1.90E-16
Glyur001218s00032877.1	PF14309.1	DUF4378	819	967	4.60E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.115
SRR1783600	control	12.262
SRR1783602	moderate drought stress	8.838
SRR1811619	moderate drought stress	8.705

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.831
DRR006520	Root Summer glycyrrhizin high producing strain	13.767
DRR006521	Root Winter glycyrrhizin high producing strain	6.049
DRR006522	Root Winter glycyrrhizin high producing strain	5.836
DRR006523	Root Summer glycyrrhizin low producing strain	13.418
DRR006524	Root Summer glycyrrhizin low producing strain	13.346
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.717
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.700

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.465
SRR2868004	Drought Stress (root)	13.810
SRR2967015	Control (root)	14.973

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.972
SRR9715740	Leaf	2.357
SRR9715741	Leaf	3.538
SRR9715739	Root	3.971
SRR9715742	Root	18.544
SRR9715743	Root	16.482

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.379
SRR8749028	MeJA induced 9h	26.930
SRR8749029	MeJA induced 9h	16.011
SRR8749030	Uninduced	7.001
SRR8749031	Uninduced	2.214
SRR8749032	Uninduced	4.202

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.759
SRR8400027	Control - Root	35.812