Gene detail information of Glyur001218s00032876 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37390.2 | 5.00E-36 | Chloroplast-targeted copper chaperone protein |
| NR | ACU23715.1 | 3.64E-133 | unknown [Glycine max] |
| Swissprot | tr|Q94BT9|ATOX1_ARATH | 5.00E-08 | Copper transport protein ATX1 |
| trEMBL | tr|C6TLC3|C6TLC3_SOYBN | 1.00E-133 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU23715.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01218 | 45678 | 47297 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001218s00032876.1 | PF00403.21 | HMA | 216 | 260 | 2.90E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.218 |
| SRR1783600 | control | 4.472 |
| SRR1783602 | moderate drought stress | 3.865 |
| SRR1811619 | moderate drought stress | 3.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.473 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.531 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.363 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.196 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.865 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.657 |
| SRR2868004 | Drought Stress (root) | 0.716 |
| SRR2967015 | Control (root) | 0.888 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.711 |
| SRR9715740 | Leaf | 0.589 |
| SRR9715741 | Leaf | 0.659 |
| SRR9715739 | Root | 0.212 |
| SRR9715742 | Root | 1.421 |
| SRR9715743 | Root | 1.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.040 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.152 |
| SRR8749032 | Uninduced | 0.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.962 |
| SRR8400027 | Control - Root | 3.195 |