Gene detail

Gene detail information of Glyur001218s00032874.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53520.1	2.00E-169	UDP-glucuronic acid decarboxylase 1
NR	XP_004494986.1	0	PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Cicer arietinum]
COG	YP_007123559.1	2.00E-135	nucleoside-diphosphate-sugar epimerase [Microcoleus sp. PCC 7113]
Swissprot	tr\|Q8VZC0\|UXS1_ARATH	0	UDP-glucuronic acid decarboxylase 1
trEMBL	tr\|I1LYW8\|I1LYW8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G19640.1}

Sequence

Transcript Sequence

>Glyur001218s00032874.1
ATGGGTAGTGGGCAAGGTGGAACCCCACCGTACTCACCGAAATCGATGAAGCACACGAGATCGCTACCCAGATCCATCAACTACCTGTTAAGGGAGCAGCGTCTCCTTTTCATCCTCGTTGGGATTTTGATTGGGTCAACCTTCTTCATCATTCAGCCCACGTTGTCCCGTATAGGCCCACCAGAGGCCCATAACTTCCTCCCCAGATCCAGTGGGCTGGCCCGTTTTAGCGGCGGCGGAGGCGGAGGGGGTCTTCCCGGGAGAGTTGGTCGTGTCCCTGCGGGGATCGGTGGTCGACGGCTGAGGGTGGTGGTTACCGGTGGGGCTGGTTTCGTTGGGAGCCACCTTGTGGATAAGTTGATTGGTAGAGGGAACGATGTGATCGTGATTGATAACTTCTTCACTGGGAGGAAGGATAACCTTGTGCACCTGTTTGGGAACCCGAGGTTCGAGCTCATTCGNCATGATGTTGTTGAGCCGATTCTGTTGGAGGTTGATCAGATNTATCACCTCGCGTGCCCTGCTTCGCCTAGGATTGGGGCAAGGTTTCTGCTCACCAGTACTAGTGAGGTTTATGGTGATCCTTTGGAGCATCCCCAGAAAGAGACCTACTGGGGGAATGTCAATCCCATTGGTGAGAGGAGCTGTTACGATGAAGGAAAGCGAACTGCGGAAACCCTGGCCATGGATTATCATCGAGGTGCTGGTGTTGAGGTTCGTATTGCTCGAATTTTCAACACATATGGACCTCGCATGTGTTTAGATGATGGCCGTGTTGTTAGCAATTTTGTTGCACAGGCTATTCGCAAAATGCCATTGACTGTATACGGTGATGGGAAGCAAACAAGAAGTTTCCAATATGTCTCTGATTTGGTTAATGGGCTGGTGGCTTTGATGGATAGTGAACATGTGGGACCTTTCAACCTGGGTAACCCAGGGGAGTTCACCATGTTAGAGCTTGCTCAGGTTGTCAAAGATACNATTGATTCAAGTGCTACAATAGAATACAAACCAAATACTGCTGATGATCCACATATGAGGAAGCCAGATATTAGCAAAGCAAAGGAACTCCTGAACTGGGAGCCAAAAGTCCCACTGAGAGAAGGTTTGCCTCTTATGGTTAGTGATTTCCGGAATCGGATTTTGAATGAAGATGAAGNAAAAGGTATGAAATAAGCATAGTAGTAGGCCCTGTGTGTATAGGGAAAAAGGCGTGTCTCCCCTTCATTTTTCTTAATCTCATNTACAGTCAGCATCATCAACAGCAAGTTCTGGTAATACGTCACTTTTTTTGTNAGGAGTTTCTACTGGCCTTTTACTCATTTATGCCTGCTTAGCACACGGTTGATGTAATTGTTAAATTTTTGACAAAATTATTTTTTCAGCAGTTTTCTTGTCTATTGTATTGATCGTAGTTGTAATATTCAATATTTGGATTCCAATATTATGAGAATGAAAGTTTATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01218	36715	40977	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08678	UXS1, uxs	EC:4.1.1.35	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001218s00032874.1	PF01370.16	Epimerase	103	157	1.80E-06
Glyur001218s00032874.1	PF01370.16	Epimerase	181	310	2.60E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	67.676
SRR1783600	control	68.266
SRR1783602	moderate drought stress	60.588
SRR1811619	moderate drought stress	59.824

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	86.270
DRR006520	Root Summer glycyrrhizin high producing strain	85.362
DRR006521	Root Winter glycyrrhizin high producing strain	66.496
DRR006522	Root Winter glycyrrhizin high producing strain	65.888
DRR006523	Root Summer glycyrrhizin low producing strain	78.907
DRR006524	Root Summer glycyrrhizin low producing strain	78.387
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.453
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.840

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	149.943
SRR2868004	Drought Stress (root)	117.230
SRR2967015	Control (root)	115.524

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.534
SRR9715740	Leaf	48.706
SRR9715741	Leaf	55.293
SRR9715739	Root	49.756
SRR9715742	Root	81.476
SRR9715743	Root	75.260

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	83.096
SRR8749028	MeJA induced 9h	68.360
SRR8749029	MeJA induced 9h	55.420
SRR8749030	Uninduced	45.368
SRR8749031	Uninduced	24.434
SRR8749032	Uninduced	35.875

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	117.657
SRR8400027	Control - Root	135.596