Gene detail information of Glyur001217s00041587 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45130.1 | 3.00E-20 | SPX domain gene 3 |
| NR | KEH16248.1 | 2.66E-61 | SPX domain protein [Medicago truncatula] |
| Swissprot | tr|Q7Y0F6|SPX5_ORYSJ | 5.00E-37 | SPX domain-containing protein 5 |
| trEMBL | tr|A0A072TH08|A0A072TH08_MEDTR | 1.00E-61 | SPX domain protein {ECO:0000313|EMBL:KEH16248.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01217 | 64764 | 66589 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001217s00041587.1 | PF03105.14 | SPX | 1 | 38 | 5.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.030 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.199 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.053 |
| SRR2868004 | Drought Stress (root) | 0.160 |
| SRR2967015 | Control (root) | 0.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.112 |
| SRR9715743 | Root | 0.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.753 |
| SRR8749028 | MeJA induced 9h | 0.544 |
| SRR8749029 | MeJA induced 9h | 0.779 |
| SRR8749030 | Uninduced | 2.452 |
| SRR8749031 | Uninduced | 1.514 |
| SRR8749032 | Uninduced | 1.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.823 |
| SRR8400027 | Control - Root | 38.373 |