Gene detail

Gene detail information of Glyur001216s00037799

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13930.1	7.00E-149	Chalcone and stilbene synthase family protein
NR	XP_007137487.1	0	hypothetical protein PHAVU_009G131000g [Phaseolus vulgaris]
COG	YP_004643652.1	6.00E-40	chalcone and stilbene synthase domain-containing protein [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q9SBL5\|CHS4_SORBI	0	Chalcone synthase 4
trEMBL	tr\|V7AZ15\|V7AZ15_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW09481.1}

Sequence

Transcript Sequence

>Glyur001216s00037799.1
ATGGCATACTTNGAGGATATGCGAGAGGCGCAAAGAGCTCGTGGCACAGCAGCAATATTAGCAATTGGTACCGCAAATCCAACCAACATCATTAACCAAGCTGACTTTACCGATTATTACCTCCGAAAACGTCACATACACCTAACTGAAAAGATTCTTAAAGAAAACCCCAACCTATGCACCTTTGGCAAACCATCCCTTGACGAACGCCAAGACATGTCGGTTGTGGAGGTTCCAAAGCTTGGTGAGAAGGCAGCATCGAAAGCCATCAAGGAATGGGGCAGGCCCAAGTCAGAGATCACCCATCTCATATTCAGTACCACCGGNGGTGTGGACATGCCCGGTGCTGACTATCAACTCATCAAGCTCTTAGGCCTCAAACCATCCATCAAAAGGTTCATGTTTTACAATAAGGGTTGCTTTTCCGGTGCCACCGTGCTTCGTCTCGCTAAGGATCTCGCTGAGAATAATGTTGGTGCTCGTGTTCTCGTAGTGTGTTGTGAGATGATCACGATTGCTATCTTTCGTGGACCCTCTGAATCCCACTTAGACTCATTGGTGGGACAAGCACTCTTNGGCGATGGAGCTTCATCCCTCATCGTTGGATGCAACCCCGACCCGCACATCGAACGACCGCTATTCTACATCGTCACAGCGTTAGAGACAATTCTACCAAACTCTGAAGATGCAATTGTGGGAAACCTGCGCGAGATGGGACACACGTTTCAACTCAAGAACAACGTCCCCCAGTTAATTGGGGATAACATAGAGAAAAGCCTCGAAGAAGCCTTTCACCCACTTGGAATTAGTGACTGGAACTCGTTGTTTTGGATAACCCACCCNGGTGGCCCTGCAATCTTAAAGCAAATAGAAGCAAAACTTGGGTTGAATCCGGATAAACTAAGGGCTACTAAGCATGTTCTAAGTGAGTACGGGAACATGTCGGGCGCATGTGTGCTTTTTATACTGGACGAGATAAGGAGGAGGTCCGTGGAGGAAGGGAAATCCACCACCGGTGAAGGACTGACATGGGGTGTTTTATTTGGATTTGGTCCTGGCTTGACCGTGGAGACAGTTACTTTGCATAGTGCCCCCATAAAATCGGGCAACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01216	54690	56658	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00660	CHS	EC:2.3.1.74	Flavonoid biosynthesis	map00941
			Circadian rhythm - plant	map04712

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0016746 transferase activity, transferring acyl groups

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001216s00037799.1	PF00195.14	Chal_sti_synt_N	41	205	1.20E-80
Glyur001216s00037799.1	PF02797.10	Chal_sti_synt_C	216	364	2.50E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.179
SRR1783600	control	2.275
SRR1783602	moderate drought stress	7.086
SRR1811619	moderate drought stress	7.119

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.416
DRR006520	Root Summer glycyrrhizin high producing strain	2.074
DRR006521	Root Winter glycyrrhizin high producing strain	2.072
DRR006522	Root Winter glycyrrhizin high producing strain	1.823
DRR006523	Root Summer glycyrrhizin low producing strain	3.280
DRR006524	Root Summer glycyrrhizin low producing strain	3.140
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.908
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.605

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.866
SRR2868004	Drought Stress (root)	0.565
SRR2967015	Control (root)	1.135

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.807
SRR9715740	Leaf	2.501
SRR9715741	Leaf	12.166
SRR9715739	Root	0.560
SRR9715742	Root	1.053
SRR9715743	Root	1.022

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.055
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.039

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.755
SRR8400027	Control - Root	1.005