Gene detail

Gene detail information of Glyur001216s00037797

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13930.1	1.00E-151	Chalcone and stilbene synthase family protein
NR	XP_007137487.1	0	hypothetical protein PHAVU_009G131000g [Phaseolus vulgaris]
COG	YP_004643652.1	9.00E-43	chalcone and stilbene synthase domain-containing protein [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q9ZS40\|CHS2_DAUCA	0	Chalcone synthase 2
trEMBL	tr\|V7AZ15\|V7AZ15_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW09481.1}

Sequence

Transcript Sequence

>Glyur001216s00037797.1
CTTATACGTATAATTTCCATTCATTCTTCCTATATAATTCCCTTACTTACACTTATAATTTCCATTCTCTCATATTAGTCTCATTTCCTTGTTAACTAATTTTGCTCTGTGAAATGGCGGCATTTGAGGATATTCGAGAGGCGCAAAGAGCTCGTGGTGCAGCTGCCATATTAGCCATTGGTACCGCAAATCCAACCAACATTGTTTACCAATCTGACTTTACCGATTATTACCTCCGAATGACCAACAACGAGCACAACACTGAACTCGGAGCCAAGTTGAAGCGCATATGTGACAGGTCAATGATAAGGAAACGTCACTTCCACCTAAATGAAAAGATTATAAAAGNAAACCCCAACCTACAAACCTATGACGATCCATCCCTTGACAAACGCCAAGAGATGCTGCTTGTGGAGGTGCCAAAGCTAGGTGAGAAGGCAGCATTGAAAGCCATCAAGGAATGGGGAAGGCCAAAGTCAGAGATCACTCATCTCATATTTTGTACCACCGTGGGTGTGGACATTCCCGGTGCTGACTATCAGCTCCTCAATCTCTTAGGCCTCAAACCATCAACTAAAAGGTTCATGTTTTACCAACAAGGTTGCTTTGCCGGTGGTACCGTGCTTCGTCTCGCTAAGGATCTTGCNGAGAATAANGNTGGTGCTCGTGTTCTCNCGGTGAATGCTGAGAGCACGGTTAATATCTTTCGTGGACACTCCGATTCACACATGGACTCGTTGGTGGGACAAGCGATATTCTCTGATGGTGCTTCATCCGTCATCGTCGGATGCAACCCTGACCCCCGTATCGAACGGCCAATATTTTACATGGTAGGGGCGTCACAGACAATTCTACCAGACTCTGACGGTGCAATTACAGGACACCTGCGCGAGGTGGGACTCATGTTTCATCTCAGGGAAAATGTCCCTAAGTTGATTGGGGACAACATAGAGAAAANCCTCGAAGAAGCATTCCACCCACTTGGAGTCACTGATTGGAACTCATTGTTTTGGGTAACCCATCCGGGNGGCCCTGCAATCTTGAAACAAATAGAAGAAAGGCTTAATTTGAATCCCGATAAAATGAGGGCAACTTACCATGTTCTGAGTGAGTATGGGAACATGTCAAGTGCATGTGTGGGTTTTATACTGGATGAGATGAGGAAGAGNTCAGTGAAGGAAGGGAAATCCACCACCGGTGATGGACTGAAGTGGGGTGTTTTACATGGGTTTGGTCCTGGCTTGACCATGGAGACAATTACTTTGTATAGCACCCCCATAAAACCAAACAACTAGTTACCATGATAAAAATATAAATATGGTCTGGGGCATTAAAAATAAAAGATAATCACGCGGGCATGCATTGCTAGAGATAATAACTAATAAATGCCCATAAAAAAGAAATAACTACAAAATAAACAATTTTGAGTTACAATGTTGGAAGACGTTGTATTTAGTTACTATGGCACTCGCCAATTAGCATTTATTTTCTAATAATATAGCACAAGCATTGGTGGAATTATTACTTGTGGAAGGANGCACTATATGTACTGAGATGGATTCTAGCTCAAGCATAAATAGAGGATCATACTATGTGTGGTATAATTATAAACAATAAGTTTGCTTGCTTATTAAAAAAAAAACCCAATAAGTTTGCTATTTGTTCGCAATTTCTTTTTATCATTTTTTTACACTTGATAAATGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01216	41264	43995	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00660	CHS	EC:2.3.1.74	Flavonoid biosynthesis	map00941
			Circadian rhythm - plant	map04712

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0016746 transferase activity, transferring acyl groups

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001216s00037797.1	PF00195.14	Chal_sti_synt_N	4	228	7.10E-104
Glyur001216s00037797.1	PF02797.10	Chal_sti_synt_C	239	386	3.70E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.011
SRR1811619	moderate drought stress	0.015

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.406
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.040

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.075
SRR2868004	Drought Stress (root)	0.057
SRR2967015	Control (root)	0.225

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	61.941
SRR9715740	Leaf	1.084
SRR9715741	Leaf	11.930
SRR9715739	Root	0.000
SRR9715742	Root	1.124
SRR9715743	Root	1.477

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.078
SRR8400027	Control - Root	1.164