Gene detail

Gene detail information of Glyur001215s00035659

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53180.1	0	glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases
NR	XP_006588802.1	0	PREDICTED: protein fluG-like [Glycine max]
COG	YP_003885923.1	1.00E-79	amidohydrolase 2 [Cyanothece sp. PCC 7822]
trEMBL	tr\|I1L922\|I1L922_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G06820.1}

Sequence

Transcript Sequence

>Glyur001215s00035659.1
ACTCTGACCAGTTTTGACACACACAGAGAAAGAAAGAGAGAATGGATTTGAGTGAGTTGAGAAAAGCGGTGGAGGAGGTGGAACTGGTGGATGGTCATGCCCACAACTTGGTTGCTAGTGATTCCAACTTGGCTTTCATCCATGCCTTTTCTGAAGCCTATGGTGAATATGCACTTTCTTCCTCACCACACACTCTATCCTTCAAGAGAAATCTAAGGGATCTAGCTGAGCTGTATGGATCCAAATTATCTTTGCGAGGCGTTGAGGAATACCGGAGAGTCTCTGGATTGCGTTCCATTGCCTCGAAATGTTTCAAAGCTGCAAGAATATCTGCAATACTCATGGATGATGGCTTGGAATTGGACAAAAAGCTTGATATTGAATGGCATAGGAGTTTTGCACCTCTTGTTGGTAGAATCTTAAGAATTGAACGGGTGGCTGAGAAAATCCTTGATGAAGATTTGCCTGATGGATCTTCCTGGACAGTGGATTCATTTACTAAAGCATTTGTCTCAAAGTTGAAATCATATCCTTCATATATTTATCTCTATTTACTCACAAACCCCATAACTGGGTTCCTTAATGTCTCCTTAACAATCGCTGGTGAGATCTTTGGATTGAAAAGCATAGCTGCGTACCGCAGTGGCCTAGAAATCAATACAAGCGTGACTAAAAAGGATGCTGAGGAGGGTCTCAGACAGGTTTTACTTGCTGGGAAGCCTGTTCGTATAGCAAACAAAAATCTTGTTGACTACATCTTCTTGCAAAGTTTGGAAGTTGCTCAATCCTATGACTTGCCAATGCAGATACACACAGGCTTTGGGGATAAAGATTTGGATATGAGACTGGCCAATCCTCTTCATCTCCGTTCAGTTCTTGAGGACAAGAGATATTNGAATTCTCGGATTGTTCTTTTACATGCATCCTATCCATTCTCAAGGGAAGCATCATATCTAGCATCTGTTTACCTTGATTTTGGGTTGGCCATTCCAAAGCTTAGTGTACATGGGATGATTTCTTCACTGAAAGAGCTTATAGAGCTGGCTCCATTGAATAAGGTGATGTTCAGTACTGATGGCTATGCATTTCCTGAAACCTACTACTTAGGTGCAAAAAAGTCTCGCGACGTTGTTTTCTNTGTTCTACGTGATGCATGCATTGATGGTGATCTCTCGATTCCCGAAGCTGTGGAGGCTGCAAAAGATATCTTTGCAAGAAATGCAATCCGTTTCTATAAGATTAGTTTCACTCATGGTGCTGTTAGTTCACATGATAATTTGCCCCAAAAGTGGAATGATGGCTTAGAGACTGATGTTTCACTTGTTCGTATAATATGGGTTGATAATTCAGGACAGCACAGATGCCGTGCTGTTCCTAGAAAGCGTTTCAATGATGTTGTCACGAAGAATGGGGTTGGCTTGGCGTTTGCGAGTATGGGAATGTCTTCTTTTATGGATGGACCAGCAGATGGGTCTGGTCTAAGTGCAGTTGGTGAAACAAGATTAACACCTGATTTGTCTACTAAAAGGACAATTCCTTGGAACAAGCAAGATGAAATGGTTTTAGCTGACTTGAATGTTAAACCTGGCCAAGCATGGGAATATTGCCCTAGAGAGGCCTTAAGAAGAGTTTGCAGAATACTGAAAGATGAATTTGACCTGGTAATGAATGCGGGATTCGAGAATGAGTTTGTTCTCTTGAAGAGCATNACAAGGGAAGGGAAAGAAGAATGGATACCATTTGACTCGAGTCCTTACTGCTCCTCATCAGCATTTGATGCTGCTTCCCCTGTACTTCGTGAAGTTGCTTCTGCTTTACATTCCTTGGGCATTTCAGTAGAACAGTTACATGCAGAAGCTGGAAAAGGTCAATTTGAGCTGGTTTTGGGACATACCATTTGTACTAAAGCTGCGGACAACTTAATTTACACCCGTGAATCTGTTAGGGCAATCGCCAGAAAACATGGCTTGCTGGCAACTTTTATTCCGAAGTACGCATTAGATGATTTGGGTTCTGGATCCCATGTGCATCTAAGCTTGTGGCAGAATGGGCAAAATGTATTCATGGCATCTGATGGATCATCAAAGCATGGAATATCAACCGTAGGAAAAGAATTTATGGCTGGAGTTCTACATCATCTTCCTTCAATTTTGCCATTCATAGCACCACTTCCTATCAGTTATGATCGGTTACAGCCCCACACATGGAGTGGTGCATACCTGTTCTGGGGAAATGAAAACAAGGAGGCTCCGTTGAGAGCTGCATCTCCACCTGGAACTCCTGGTGGTCTN

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01215	65287	74334	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006542 glutamine biosynthetic process

GO:0006807 nitrogen compound metabolic process

GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004356 glutamate-ammonia ligase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001215s00035659.1	PF04909.9	Amidohydro_2	234	400	1.50E-27
Glyur001215s00035659.1	PF00120.19	Gln-synt_C	520	743	3.50E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.337
SRR1783600	control	7.235
SRR1783602	moderate drought stress	8.148
SRR1811619	moderate drought stress	8.262

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.243
DRR006520	Root Summer glycyrrhizin high producing strain	3.180
DRR006521	Root Winter glycyrrhizin high producing strain	3.433
DRR006522	Root Winter glycyrrhizin high producing strain	3.404
DRR006523	Root Summer glycyrrhizin low producing strain	3.574
DRR006524	Root Summer glycyrrhizin low producing strain	3.369
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.839
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.829

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.923
SRR2868004	Drought Stress (root)	24.553
SRR2967015	Control (root)	27.893

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.055
SRR9715740	Leaf	10.913
SRR9715741	Leaf	12.491
SRR9715739	Root	5.018
SRR9715742	Root	5.737
SRR9715743	Root	5.661

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.063
SRR8749028	MeJA induced 9h	38.810
SRR8749029	MeJA induced 9h	18.548
SRR8749030	Uninduced	21.938
SRR8749031	Uninduced	20.177
SRR8749032	Uninduced	18.810

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.220
SRR8400027	Control - Root	19.098