Gene detail

Gene detail information of Glyur001214s00026375

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G60500.1	2.00E-97	Dynamin related protein 4C
NR	XP_003629867.1	1.86E-151	Interferon-induced GTP-binding protein Mx [Medicago truncatula]
Swissprot	tr\|Q9ZP55\|DRP4C_ARATH	3.00E-112	Dynamin-related protein 4C
trEMBL	tr\|G7L7C0\|G7L7C0_MEDTR	7.00E-152	Dynamin 4C-like protein {ECO:0000313\|EMBL:AET04343.1}

Sequence

Transcript Sequence

>Glyur001214s00026375.1
GCGTGTTGTTCAGATGCATAATAAACCATCATAGATATTGAAAGGTGGTTTTTCACTTTATAAATACCCTTCTTTGGCCACTTTGCTTCCATTTTCTGATATCTCCTTCCTGTTCTATACTAAGTGGAAGATAAGAGAGAATATATATATATATATATGCAAACATATACATCAAGGGCTAGAAGAACCTGTGCTCCTGTGTCCTGTCTTTAATATTAATTCTTCATTTTGTTTCCTCAACAGGTTAGTGAGCAAAATACTGAAACATCATTTGAAATCCTTTCTTAATATGCACTTCCCCTCTTTTGGGGGCAAATCAAACTTTTTCACTTGAAACCATGATTTAATTTGGCAACACAAATCTGCTAGCTCTAGCTAGATTGTAAACTATTATAAGCAAATGAAATTTGCAGCTAAATAGCCAATGAATTAAATGTTGGGTTGAGGGGCTTTGAAGGGTAGAGAGGGGCTGTTCCAAGTTTCCATTTTTTCACTTTTCCTTTCAAGATTCTTCCTAATCAAACAAAACTAGCTGAAAGACCAGAATTTTAACTCATGGTTTTTGTTAAGATATCTATATTGTCTTTTTTCTGTTGAGGTGTAATATATTGATGATCTTTCTTTTACTTACTTGATCGAGCTTGCAATAAGCATGAGTTTTCCAAACCAATCCATGACCATGACCATGTCAGCTTCTGATCCCCAGAGAAAGATGCAGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACCACCAATCGCCAAGTTAACTTCTGCAAGTGCAGAAATGGCCTGCTCAAGAACGTATATCAATTATCTGTGCTCTGTGATGCAGAAGTTGCTCTAATCATCTTCTCAAACCATGGACGCCTCTATGAATATGCAAATAACAGTTCTTGGTTTGTTTGGTACTGGGCACAAAGATCTGATGTAACAGATAAATATAGAAGCACTATGGTTGTTAGTAGCAACAGGGCAAGGAATTGGGAAGCTATGAAGGACTGGATTCGCAACACCCCATTGAGTTTGGTGGTGAAGAAAAATGGTGTTCCTGACTTAACCATGGTTGATCTTCCTGGGATTACTCGTGTGCCTGTTCACGGCCAACCTGATAATATCTATGACCAGATTAAAGATATTATCATGGAGTACATTACACCAGAAGAGAGCATCATTCTGAATGTTCTTTCTGCTACTGTTGATTTCACTACTTGTGAGTCCATAAGGATGTCACAGAGTGTTGACAAAACTGGGTTGAGAACACTGGCTGTGGTCACAAAGGCTGATAAGTCTCCTGAAGGGTTGTTGGAAAAGGTTACTGCTGATGATGTCAACATTGGTCTTGGATATGTCTGTGTGAGAAACCGAATTGGTGAAGAGTCCTATGAGGATGCAAGGAAGGTGGAGGAAAAGCTGTTTGAGTCTCACCCACTTCTCTCCAAAATTGATAAGTCCATTGTGGGTATTCCAGTTTTGGCTCAAAAGCTGGTTCGGGTTCAAGCTATGATTATTTGCAAAACTCTGCCAGAGATTGTGAAGAAGATCAGTGAGAAGCTTGATGATAATTTAGCCGTGTTAGATAAACTTCCTGCTAACTTGACTTCCGTTGGTGATGCTATGTCCATTTTCGTGCATATTGTTGGTTTGTCTAGAGATTCTCTTAGAAAGATTCTTGTTGTTGGAGATTTTGAGGAGTACCCTGAAGAAAAGCACATGCATTGCACTGCTCGGTTGGTTGAGATGCTTGAATCGTTCTCTAGTGATCTTCACAACTGTGCAGAAAGGGGAAGCAGAGACAAGGTACGACAATTTGAGAGAGCCAATGAGGGTGTTCTGAGCATTTTTGGCTTCTTCTTCCCATGCGACAACTCTTGCTTGCCGCTAGCTATTGCAGTGGCTGAAATGGACGGCTGTGATTCATCAGCCAATCAGTGGCTCGACGAAATTAAGGTATATCAGTGGATTGCAGATGGTGTGAGGAATGAGATCTTTCGACGTTTGCTTTTGAAGATTGCGTTTAAGAGGTACAAGAAAGCATGTTCAGATTCATCTGGTGCCAGATCCGCTTCTGAGGTTAATGCTCAGTTTTACCAGCAAGAAGCTGCCAAACTGCGTGTGCAAATCAGTAATCTGCAGAATCACAACAGGCAAGAGATAGACTTGCATAATAGCAACCAGCTTCTTAGAGCAAAGATAGCAGAAATTAGTGAGAGGAGCCACCACAATGTTAACGTGTTTCCTGGAGGCACAAACTTTGAATCTATGCAATCTCAGCAGCAGTTTGACTCTCGCAGCTTCTTCCAAGTGACTGGATTACAACCCAATAATCAGTATGCAAGACTTGACCAGATGTCTCTTCAATTTGTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01214	58418	77784	-

Gene family

Gene family	subfamily
Transcription Factors Family	M-type

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003924 GTPase activity

GO:0005525 GTP binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001214s00026375.1	PF00319.13	SRF-TF	30	79	2.60E-20
Glyur001214s00026375.1	PF00350.18	Dynamin_N	114	212	5.60E-16
Glyur001214s00026375.1	PF01031.15	Dynamin_M	227	395	3.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.213
SRR1783600	control	1.307
SRR1783602	moderate drought stress	1.487
SRR1811619	moderate drought stress	1.677

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.716
DRR006520	Root Summer glycyrrhizin high producing strain	1.689
DRR006521	Root Winter glycyrrhizin high producing strain	1.125
DRR006522	Root Winter glycyrrhizin high producing strain	1.521
DRR006523	Root Summer glycyrrhizin low producing strain	2.035
DRR006524	Root Summer glycyrrhizin low producing strain	1.717
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.975
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.837

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.207
SRR2868004	Drought Stress (root)	3.774
SRR2967015	Control (root)	4.323

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.290
SRR9715740	Leaf	1.055
SRR9715741	Leaf	1.760
SRR9715739	Root	0.080
SRR9715742	Root	1.161
SRR9715743	Root	1.960

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.671
SRR8749028	MeJA induced 9h	0.505
SRR8749029	MeJA induced 9h	0.238
SRR8749030	Uninduced	0.335
SRR8749031	Uninduced	0.129
SRR8749032	Uninduced	0.041

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.512
SRR8400027	Control - Root	4.814