Gene detail

Gene detail information of Glyur001214s00026371.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78580.1	0	trehalose-6-phosphate synthase
NR	XP_003524218.1	0	PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like [Glycine max]
COG	YP_006545085.1	7.00E-152	alpha,alpha-trehalose-phosphate synthase (UDP-forming) [Methanoculleus bourgensis MS2]
Swissprot	tr\|Q9SYM4\|TPS1_ARATH	0	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
trEMBL	tr\|K7KQK7\|K7KQK7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G29651.1}

Sequence

Transcript Sequence

>Glyur001214s00026371.1
GCCAAGCGTATGCAAGGGAACAATTATAACTGTACTCCTTTAACACCAAGATCTAGATTGGAAAGGCTTTTGAGGGAAAGAGAGCTAAGGAGATCCAGCAGGTATATTCAACCAACCGAGGAGGCAAGAGATGGCAACAAAGAGGCAGAACAATTTTATGGTGATTCATTCTTAAGTGAGAGTGAAATTTTGGGTACTCAGAATGAGGAAGAGGTCGCGGAAACGGATGTGGATGCAAGAGGTTTTACAGATAGAAGTCAGAGGCAAGATGAGAGGCCTTACAAACAACGCTTGTTGGTGGTAGCTAACAGGTTGCCTGTCTCTGCTGTTAGGGAGAGTGTGGACTCATATCACCTTGAGATAAGTGTTGGTGGCCTTGTCAGTGTAAAGGAGTTTGACACTAGATGGATTGGGTGGGCTGGTCTGAATGTGCATGATGATGTTGGGCAGAGAGCTTTGACTAAATCTTTAGCTGAAATGCGATGCATCCCAGTATTTCTGGATGAGGAGATAGTTAATCAGTACTATAATGGTTATTGCAACAACATCTTGTGGCCTCTATTCCATTACCTTGGGCTCCCACAAGAAGATCGACTTGCTACCACCCGTAGTTTCCAATCTCAATTCGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTAGTGAATCAGAATTATGAGGAAGGAGATGTTGTCTGGTGCCATGATTACCACCTAATGTTCCTTCCAAAGTGTTTGAAAGAGTACAATGACAAAATGAAAGTTGGCTGGTTTCTCCATACACCTTTTCCTTCCTCAGAAATACATAGGACTCTACCATCCAGATCAGAGCTGTTGAGATCTGTACTTGCTGCTGATTTGGTGGGATTCCATACTTACGATTATGCAAGGCATTTTGTTAGTGCTTGTACTCGTATTCTTGGGCTAGAGGGTACACCTGAAGGAGTAGAAGATCAAGGGAAGCTAACCCGTGTGGCTGCGTTTCCTATTGGGATTGACTCTGATAGATTTATTCGAGCCCTTGAGCTTCCTGAAGTCCAGAGTCACATGAAAGAACTGAAAGAAAGATTTGCAGGCCGAAAGGTAATGTTGGGGGTTGATCGTCTTGATATGATAAAAGGAATTCCCCAGAAAATCTTAGCATTTGAAAAGTTCCTCGAGGAGAATTCTAATTGGCGTGATAAAGTCGTCTTGCTGCAAATTGCCGTGCCTACTAGGACAGATGTTCCTGAATATCAAAAGCTTACGAGCCAGGTGCATGAGATTGTAGGACGCATCAATGGAAGATTTGGAACACTTACTGCTGTTCCAATACACCATTTGGATCGGTCACTTGACTTTCATGCATTATGTGCGCTCTATGCTGTTACTGATGTAGCACTTGTTACATCTTTAAGGGATGGAATGAATCTTGTCAGCTATGAATTCGTCGCGTGTCAAGCTTCCAAGAAAGGGGTTCTCATTTTAAGTGAGTTTGCAGGTGCAGCACAGTCTCTTGGTGCTGGTGCTATCTTGGTAAATCCATGGAATATCACAGAGGTTGCGGCCTCTATTGGTTATGCTTTGGATATGCCAGCTGATGAAAGAGAAAAGCGGCATCAGGTTAACTTCAAGCATGTGACAACTCACACATCACAAGAATGGGCTGCAACTTTTGTGAGCGAACTGAATGACACCATTGTCGAAGCTCAGCTTAGGACAAGACAAGTTCCTCCATTACTTCCCAATAAAGCGGCAGTTGATTGTTACTCAAAATCCAATAACCGATTGATTATACTGGGTTTCAATGCCACTTTGACTGAACCAGTAGATGCCCTTGGAAGGGGTGGTCAGATTAGAGAATTGGAACTTAAATTGCACCCAAATCTGAAGGAACCTTTAAAGAGGTTATCTAACGATCCAAAAACAACAATAGTTGTCCTGAGTGGGAGTGGTCGAGCTGTCCTGGACAAAAACTTCAGTGAATACAATATGTGGTTGGCAGCAGAAAATGGAATGTTTTTGCGACGTACTTCAAGTGAATGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGTGTAAAGCATGTTTTTGAGTATTTTACTGAAAGAACCCCACGGTCTCATTTTGAGCTTCGTGAGACTTCAANTGTATGGAATTATAAGTATGCAGATATTGAGTTTGGAAGGCTTCAAGCAAGAGATCTGCTTCAGCATCTTTGGACGGGGCCAATATCAAATGCATCTCTTGATGTTGTCCAAGGTGGTCGATCTGTTGAGGTCCGTGCAGTTGGTGTGTCAAAGGGAGCAGCNATTGATCGTATCCTGGGAGAGATAGTTCATAACAAAGGCATGAAGGAACCAATTGATTACGTCTTATGCATTGGGCACTTTCTAGCAAAGGATGAAGATGTCTATAAATTTTTTGAGCCAGAACTCCCTTCTGAATCATCACCAATAGCAAGAGCTATGCTATCCAATCCTTATAGGCCATCATCTCTGCCAAAATTTTCACCCAGCAAAAGTGTGCCTAAAGCATCTCGCTATAAGAAGCAACGTTCATTGTCAAATATAGAAAGGAGAGAAATTGACCGTGCAAGTGGTGATCCTTGGAGACCAGCAAATCGTGATAGAATATCACTACGTGAGGGTTCTTCAGTTCTTGATCTTAAAGGTGATAATTACTTCTCTTGTGTTGTTTCACGAAAGAGATCAAGTGCCCGCTACCTTCTTAAAACCTCAGATGATGTTGTCAATCTCTTAAGTGACCTGGCGGATCATTCTTCATCGCCATCAACTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01214	25116	32738	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT20

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K16055	TPS	EC:2.4.1.15 3.1.3.12	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process
GO:0005992 trehalose biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001214s00026371.1	PF00982.16	Glyco_transf_20	97	558	1.90E-186
Glyur001214s00026371.1	PF02358.11	Trehalose_PPase	617	814	2.50E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.258
SRR1783600	control	0.251
SRR1783602	moderate drought stress	0.022
SRR1811619	moderate drought stress	0.041

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.166
DRR006520	Root Summer glycyrrhizin high producing strain	0.170
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.119
DRR006524	Root Summer glycyrrhizin low producing strain	0.118
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.287
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.265

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.661
SRR2868004	Drought Stress (root)	0.489
SRR2967015	Control (root)	0.448

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.308
SRR9715740	Leaf	0.272
SRR9715741	Leaf	0.093
SRR9715739	Root	0.000
SRR9715742	Root	0.022
SRR9715743	Root	0.011

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.574
SRR8749028	MeJA induced 9h	0.047
SRR8749029	MeJA induced 9h	0.074
SRR8749030	Uninduced	0.042
SRR8749031	Uninduced	0.019
SRR8749032	Uninduced	0.203

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.237
SRR8400027	Control - Root	0.199