Gene detail

Gene detail information of Glyur001213s00027163

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47380.1	0	Protein phosphatase 2C family protein
NR	XP_004499069.1	0	PREDICTED: probable protein phosphatase 2C 12-like isoform X2 [Cicer arietinum]
COG	YP_007093219.1	6.00E-06	protein serine/threonine phosphatase [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q9FX08\|P2C12_ARATH	0	Probable protein phosphatase 2C 12
trEMBL	tr\|G7I3N5\|G7I3N5_MEDTR	0	Catalytic/protein phosphatase type 2C {ECO:0000313\|EMBL:AES59470.2}

Sequence

Transcript Sequence

>Glyur001213s00027163.1
ATGTCTACAAGGAGTGAACACCAAACAATTCCTCTTTCGGTNCTCCTGAAGCGTGAATTGGCGAATGAGAGAATTGAGAAGCCTGAGATTGTTCATGGTCAAGCGGGTCAAAGCAAGAAAGGAGAGGATTTCACCCTGCTCAAGTCCGAGTGTCAGAGGATGGTGGGTGATGGGGTCTATACATATTCCGTTTTTGGGCTATTTGATGGACACAATGGATCTGCTGCTGCTATTTATACTAAGGAGAATCTTCTAAATAATATTTTAAGTGCANTTCCTCCAGATCTTAACAGAGATGAGTGGTTGGCTGCGTTGCCTAGAGCTTTGGTTGCAGGCTTTGTAAAAACCGATAAAGATTTTCAACAGAAAGCACAAAAATCAGGAACAACTGTTACCTTTGTGATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGTGTACTAGAATCTCCTGATGGTGGGCTTTATTACTTGTCAGCAGATCATAGGCTAGAAACAAATGAAGAGGAGAGGATTCGCATCACCTCTAGTGGAGGTGAGGTTGGTCGGCTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGCTTGTGCCTTTCAAGGTCTATTGGAGATATGGATATTGGTGAATTTATTGTCCCTGTACCATATGTGAAGCAAGTGAAGTTGTCCACCGCTGGAGGCCGACTTGTTATCTGCAGTGATGGTGTTTGGGATGCTCTACCTGCAGAAGTGGCCTTTGATTGTTGTCGTGGCATGTTACCAGAGGCTTCTGCACCACATATTGTTAAAGAAGCTATACAAGCAAAGGGACTTAGAGATGATACAACCTGCATCGTTGTTGATATATTACCTCAGGAGAAGCCATCTGTTCCACCACAAAAGAAGCCAGTAAAAGGAATGCTCAAGTCCATGTTTCGTAAAAAGTCTTCTGAATCATCTTCTTATATTGACAAAGAATACTTGGAGCCAGATGTGGTAACGGAACTATATGAGGAAGGGTCTGCCATGCTTTCAGAGAGGTTAGATACTAAATATCCAATCTGCAACATGTTCAAGTTGTTTATGTGTGCAGTATGTCAAGTAGAAATAAAACCTGGAGAGGGTATTTCAGTACATGAGGGTGCGCCCAACCCTCGTAAATTGCGTCCCTGGGATGGACCTTTCCTTTGCTCAGGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGAGCATTAGATAGACGACTTAGCAGCGGAAGTGACGAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01213	67345	71707	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001213s00027163.1	PF00481.16	PP2C	57	278	6.70E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.984
SRR1783600	control	0.998
SRR1783602	moderate drought stress	0.589
SRR1811619	moderate drought stress	0.641

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.889
DRR006520	Root Summer glycyrrhizin high producing strain	0.925
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.957
DRR006524	Root Summer glycyrrhizin low producing strain	1.076
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.008
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.941

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.259
SRR2868004	Drought Stress (root)	6.474
SRR2967015	Control (root)	6.703

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.683
SRR9715740	Leaf	0.200
SRR9715741	Leaf	0.527
SRR9715739	Root	0.081
SRR9715742	Root	0.753
SRR9715743	Root	0.809

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.311
SRR8749028	MeJA induced 9h	7.668
SRR8749029	MeJA induced 9h	4.219
SRR8749030	Uninduced	3.763
SRR8749031	Uninduced	6.980
SRR8749032	Uninduced	4.734

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.189
SRR8400027	Control - Root	6.546