Gene detail

Gene detail information of Glyur001213s00027161

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37560.1	2.00E-125	origin recognition complex second largest subunit 2
NR	XP_004487673.1	0	PREDICTED: origin recognition complex subunit 2-like [Cicer arietinum]
Swissprot	tr\|Q38899\|ORC2_ARATH	3.00E-157	Origin of replication complex subunit 2 {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|G7I3N6\|G7I3N6_MEDTR	0	Origin recognition complex second largest subunit 2 {ECO:0000313\|EMBL:AES59471.1}

Sequence

Transcript Sequence

>Glyur001213s00027161.1
CAATTTCTTTCTCCGGGTTATCCTAAATCCGATGAGAAATGGCGGGAAAATTGTCTAGGGCACAACTCACAAGAGCAGATAGAATAGAATAGATGTTCACCAAAAAAAGATAGAATNGAATAGAAGAGTGCATTGCATGATAAATTTGCATTTCAATTTCAGTGTTGTTTACCTTCTTTTTCCNGTTTAATTGAAAGATGGACGAGAATGACAATTGGGAGGAGGAGGAGGAGGAGGAGTTCGAATTCTCAAGAAATTATTTTCTGGCGAAGGAAGTGGCATCCTCGGTGAAGAAGTCAACACACAAGGTTACCGACCTCAACGTTGTCGATGAACAGGATCTAAGGGACGCCGCATTGCACATCCAACCCAAGCATGAAAACGAGGTTGCCCTCTTAATGGATTCCTATACAGCTATGTATCATGAATGGCTTCTCGCGCTGAGATGTGGTTTCGCTCTTCTAATGTATGGCTTTGGGTCTAAGAAGGCTTTGATTGAAAATTTTGCTTCAACTGCACTGGATGAATATTCTGTAGTTGTCATTAATGGATATCTTCAGGCCATTAACTTAAAACAGGTTGTGATAGCTTTAGCTGAACTGCTGTGTGATCAAGTGAAAACTAAACGAAGGGTTTCTGGTCGGGACTTGCCCAAGAGCCAGCAGCCGTTCAATTCTCAATCCATGGATGATCTTCTTACATTTTTGGATGAAGTGGAAATAGAGGACAATGGTTGTTTTGTTTGTGTTGTCATTCACAATATTGATGGACCTGGATTGAGGGATTCTGAAACCCAGCAATATCTTGCTCGACTGGCTGCTTGTACCCATATTCGCATTGTTGCCTCTATTGACCATGTTAATGCTCCCCTGTTTTGGGACAAGAATATGGCTCACACACAGTTCAATTGGTGCTGGTACCATGTTCCTACATTTGCCCCTTATAAGGTTGAAGGCATGTTTTATCCTCTGATTCTTGCACATGGCGGTGCCAGCCAAAGTGTCAAAACAGCTGCAATAGTTTTGCAAAGTTTGACACCCAATGCCCAGAGCATGCCAATCAGTGATCTCTACTCGGTATGTCGTGAACGTTTCCTTGTTAGCAGTCAGGTTACTCTGAATTCTCATTTAACTGAATTTAAAGACCATGAGCTGGTCAAGACCAAGAAGCATTCCGATGGTCAAGATTGCTTGTACATCCCTCTGGCAACAGAAGCACTTCAAAAAGTTCTACTTGAGATCAGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01213	62536	65317	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006260 DNA replication

cellular_component

GO:0000808 origin recognition complex

GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001213s00027161.1	PF04084.9	ORC2	35	286	2.70E-63
Glyur001213s00027161.1	PF04084.9	ORC2	285	340	2.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.157
SRR1783600	control	7.444
SRR1783602	moderate drought stress	2.847
SRR1811619	moderate drought stress	3.118

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.211
DRR006520	Root Summer glycyrrhizin high producing strain	5.191
DRR006521	Root Winter glycyrrhizin high producing strain	6.869
DRR006522	Root Winter glycyrrhizin high producing strain	6.315
DRR006523	Root Summer glycyrrhizin low producing strain	2.095
DRR006524	Root Summer glycyrrhizin low producing strain	1.819
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.407
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.241

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.985
SRR2868004	Drought Stress (root)	19.193
SRR2967015	Control (root)	16.026

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.596
SRR9715740	Leaf	0.553
SRR9715741	Leaf	1.801
SRR9715739	Root	1.645
SRR9715742	Root	3.066
SRR9715743	Root	3.085

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.893
SRR8749028	MeJA induced 9h	18.420
SRR8749029	MeJA induced 9h	16.645
SRR8749030	Uninduced	4.691
SRR8749031	Uninduced	4.172
SRR8749032	Uninduced	3.839

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.559
SRR8400027	Control - Root	10.718