Gene detail

Gene detail information of Glyur001213s00027157

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48700.1	1.00E-72	carboxyesterase 13
NR	XP_003550344.1	1.97E-162	PREDICTED: probable carboxylesterase 13-like [Glycine max]
COG	YP_006671133.1	5.00E-19	putative 6-hexanolide hydrolase [Gordonia sp. KTR9]
Swissprot	tr\|Q9SMM9\|CXE13_ARATH	1.00E-93	Probable carboxylesterase 13
trEMBL	tr\|I1MXQ4\|I1MXQ4_SOYBN	7.00E-163	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G36220.1}

Sequence

Transcript Sequence

>Glyur001213s00027157.1
ATGGAGGAAGACTCAACCAACAATACCAACCCACACCCACACGACGAGCACGTANCCCACGAATTCCCAGGCCTCATCCGCGTCTTCACCAACGGCCGTGTCGAAAGACTCACAGGAACCGACGTCGTTCCACCCTCCACCGACCCTCAGTCTCCCGTTTCCTCCAAAGACGTCACTTTCAACACCATCTCCGCTCGTCTCTTCCTCCCACAACTCCCCAATAACCGCCACAACCACCTNCCTCTCCTCGTCTACNTCCACGGCGGCGGTTTCTGCGCCTTCTCTCCCTTCACCGCCACCTACCACAACTACCTAACCACCCTCGTTTCCCAAGCCAAAGTCATCGCCGTCTCCGTCGACTACAGGCTAGCACCGGAACACCCTATCCCCGNCGCATACGAAGACTCATGGGCCGCGCTTCACTGGGTCGCGTCCCACCGTAACAACAATGGACCCGAGCCCTGGCTTAACGACCACGCCGATTTCACTCGTGTCTTCTTGGCCGGTGACAGCGCCGGCGCCAACGTAGTTCACAACCTAGCCATGTTCGCCNGGGACCCGGATTCGGGTCTCGAGATGGGGATTCTAGGGGCGTGTTTGGTTCACCCGTTTTTCTGGGGCTCCGTTCCAATCGGGTCGGAGGTGTTGTTGGATCCGGATATGAAGGCGGTGGCGGATAAATTCTGGAAATCCATGTGTCCTCCGTCGGTTGCGACGGAGAAAGGTGGCGATGACGACCCGCGGTTTAACCCGGTTGCGGAGGGTGCACCCGGGTTGGAGTGGTTGGGGTGTGGGAGGGTGTTGGTGTGTGTGGCGGAGAAGGATGTGTTGAGGGAGAGAGGGTGGGTTTATTACAATGCGTTGAGTCGGAGTGGGTGGTTGGGGGTGGTGGAGATTGAGGAGACTCTTGGGGAGGGTCATGCTTTTCATCTCTATGATTTGGGGTGTGANAAGGCCAAGGGTTTGATTCAATGCATGGCTGATTTCTTCAACAGAGACCCGCCTCCTTTTTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01213	50344	51360	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001213s00027157.1	PF07859.8	Abhydrolase_3	83	310	1.10E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.436
SRR1783600	control	0.498
SRR1783602	moderate drought stress	0.925
SRR1811619	moderate drought stress	0.889

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.196
DRR006520	Root Summer glycyrrhizin high producing strain	1.733
DRR006521	Root Winter glycyrrhizin high producing strain	0.439
DRR006522	Root Winter glycyrrhizin high producing strain	0.535
DRR006523	Root Summer glycyrrhizin low producing strain	1.951
DRR006524	Root Summer glycyrrhizin low producing strain	2.477
DRR006525	Leaf Summer glycyrrhizin high producing strain	48.345
DRR006526	Leaf Summer glycyrrhizin high producing strain	49.766

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.587
SRR2868004	Drought Stress (root)	2.809
SRR2967015	Control (root)	1.922

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.525
SRR9715740	Leaf	40.661
SRR9715741	Leaf	20.103
SRR9715739	Root	1.343
SRR9715742	Root	2.569
SRR9715743	Root	2.625

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.340
SRR8749028	MeJA induced 9h	0.467
SRR8749029	MeJA induced 9h	0.588
SRR8749030	Uninduced	0.063
SRR8749031	Uninduced	0.204
SRR8749032	Uninduced	0.522

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.966
SRR8400027	Control - Root	1.482