Gene detail information of Glyur001213s00027154 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26550.2 | 1.00E-82 | heme oxygenase 2 |
| NR | XP_004499081.1 | 2.74E-135 | PREDICTED: probable inactive heme oxygenase 2, chloroplastic-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|O48722|HMOX2_ARATH | 1.00E-102 | Probable inactive heme oxygenase 2, chloroplastic (Precursor) |
| trEMBL | tr|E7ECB3|E7ECB3_MEDSA | 9.00E-131 | Heme oxygenase 2 {ECO:0000313|EMBL:ADV15621.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01213 | 30428 | 33642 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00510 | HMOX, hmuO, ho | EC:1.14.14.18 | Porphyrin and chlorophyll metabolism | map00860 |
| Mineral absorption | map04978 | |||
| Fluid shear stress and atherosclerosis | map05418 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001213s00027154.1 | PF01126.15 | Heme_oxygenase | 104 | 267 | 4.80E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.832 |
| SRR1783600 | control | 0.775 |
| SRR1783602 | moderate drought stress | 1.619 |
| SRR1811619 | moderate drought stress | 1.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.599 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.538 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.219 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.164 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.298 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.377 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.736 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.571 |
| SRR2868004 | Drought Stress (root) | 6.523 |
| SRR2967015 | Control (root) | 5.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.650 |
| SRR9715740 | Leaf | 13.804 |
| SRR9715741 | Leaf | 13.499 |
| SRR9715739 | Root | 1.502 |
| SRR9715742 | Root | 4.402 |
| SRR9715743 | Root | 3.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.798 |
| SRR8749028 | MeJA induced 9h | 3.539 |
| SRR8749029 | MeJA induced 9h | 3.006 |
| SRR8749030 | Uninduced | 3.527 |
| SRR8749031 | Uninduced | 2.262 |
| SRR8749032 | Uninduced | 3.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.412 |
| SRR8400027 | Control - Root | 4.444 |