Gene detail information of Glyur001210s00032326 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39700.1 | 3.00E-125 | expansin A4 |
| NR | XP_003552173.1 | 1.38E-180 | PREDICTED: expansin-A4 [Glycine max] |
| Swissprot | tr|O48818|EXPA4_ARATH | 4.00E-158 | Expansin-A4 (Precursor) |
| trEMBL | tr|I1N2H6|I1N2H6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G39850.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01210 | 66507 | 69654 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001210s00032326.1 | PF03330.13 | DPBB_1 | 67 | 154 | 1.80E-24 |
| Glyur001210s00032326.1 | PF01357.16 | Pollen_allerg_1 | 165 | 242 | 3.30E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.469 |
| SRR1783600 | control | 5.631 |
| SRR1783602 | moderate drought stress | 24.502 |
| SRR1811619 | moderate drought stress | 24.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.886 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.799 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.620 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.560 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.217 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.215 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.061 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.559 |
| SRR2868004 | Drought Stress (root) | 10.410 |
| SRR2967015 | Control (root) | 13.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.351 |
| SRR9715740 | Leaf | 3.250 |
| SRR9715741 | Leaf | 2.670 |
| SRR9715739 | Root | 3.256 |
| SRR9715742 | Root | 3.116 |
| SRR9715743 | Root | 2.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.285 |
| SRR8749028 | MeJA induced 9h | 3.293 |
| SRR8749029 | MeJA induced 9h | 3.991 |
| SRR8749030 | Uninduced | 0.130 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.955 |
| SRR8400027 | Control - Root | 4.076 |